Detail Information

Basic Information:


  VIRBase ID:  

HHID00098298

  Virus:  

Middle East respiratory syndrome-related coronavirus (MERS-CoV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa_circ_0002248 hsa-miR-329-5p
miRBase
Accession/Entrez ID		 hsa_circ_0002248 MIMAT0026555
Organism Homo sapiens Homo sapiens
Category circRNA miRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-329-5p
rs1234371905 chr14:101026810    T/G
rs745457583 chr14:101026809    GT/G
rs753464954 chr14:101026819    C/T
rs986633556 chr14:101026815    G/C
rs986633556 chr14:101026815    G/T
rs1050442965 chr14:101027122    C/T
rs1244763083 chr14:101027128    T/G
rs1247447111 chr14:101027125    G/A
rs1299172342 chr14:101027124    G/A
rs1345199839 chr14:101027123    TG/T
rs1380199006 chr14:101027126    GT/G
rs1383457999 chr14:101027132    G/A
rs1386240186 chr14:101027114    G/A
rs773780315 chr14:101027131    T/C
rs1346812250 chr14:101026800    G/A
rs765828605 chr14:101026804    T/C
rs778550662 chr14:101026800    GT/G
rs778550662 chr14:101026800    GT/GTT
rs1288955690 chr14:101027116    G/A
rs1382304316 chr14:101027119    T/C

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa_circ_0002248
Exosome Blood     -
hsa-miR-329-5p
Exosome Serum     18589210
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells|Urine     -

Interaction Network (The top 100 interactions):


Interactor1: hsa_circ_0002248
Interactor2: hsa-miR-329-5p

Evidence Support:


Weak-Evidence Illumina sequencing
Prediction-Evidence miRanda
Support Database ViRBase

References:


PMID 32223537 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line Calu-3 cells Interactor2 expression Upregulation
Description The circRNA-miRNA pairs with strong negative correlations were selected for circRNA-miRNA binding site prediction using miRanda (http://www.microrna.org/) v3.3a.

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