Detail Information

Basic Information:


  VIRBase ID:  

HHID00096527

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-210-5p:           RSL1D1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-210-5p RSL1D1
miRBase
Accession/Entrez ID		 MIMAT0026475 26156
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CSIG//L12//PBK1//UTP30

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-210-5p
rs1307849834 chr11:568150    C/T
rs1328893125 chr11:568155    T/A
rs1339953548 chr11:568159    G/A
rs1392659721 chr11:568157    C/T
rs1393385015 chr11:568155    TGC/T
rs1394548019 chr11:568152    G/C
rs1484589425 chr11:568153    T/C
rs758885854 chr11:568158    G/A
rs764507105 chr11:568162    G/A
rs764507105 chr11:568162    G/T
rs887377650 chr11:568163    G/A
rs1317060428 chr11:568166    G/A
rs1373131153 chr11:568167    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RSL1D1
chr16:11931377(-) A-I      3'UTR
chr16:11931519(-) A-I      3'UTR
chr16:11931522(-) A-I      3'UTR
chr16:11932140(-) A-I      intronic
chr16:11941998(-) A-I      intronic
chr16:11931488(-) A-I      3'UTR
chr16:11931426(-) A-I      3'UTR
chr16:11931441(-) A-I      3'UTR
chr16:11931424(-) A-I      3'UTR
chr16:11931412(-) A-I      3'UTR
chr16:11931401(-) A-I      3'UTR
chr16:11931383(-) A-I      3'UTR
chr16:11939592(-) A-I      intronic
chr16:11939660(-) A-I      intronic
chr16:11939058(-) A-I      intronic
chr16:11939761(-) A-I      intronic
chr16:11940056(-) A-I      intronic
chr16:11932163(-) A-I      intronic
chr16:11932223(-) A-I      intronic
chr16:11942419(-) A-I      intronic
chr16:11939707(-) A-I      intronic
chr16:11932595(-) A-I      intronic
chr16:11943176(-) A-I      intronic
chr16:11942767(-) A-I      intronic
chr16:11932708(-) A-I      intronic
chr16:11932956(-) A-I      intronic
chr16:11933185(-) A-I      intronic
chr16:11933209(-) A-I      intronic
chr16:11941904(-) A-I      intronic
chr16:11941991(-) A-I      intronic
chr16:11936477(-) A-I      intronic
chr16:11936648(-) A-I      intronic
chr16:11936995(-) A-I      intronic
chr16:11940130(-) A-I      intronic
chr16:11940140(-) A-I      intronic
chr16:11940143(-) A-I      intronic
chr16:11941863(-) A-I      intronic
chr16:11936996(-) A-I      intronic
chr16:11939067(-) A-I      intronic
chr16:11939186(-) A-I      intronic
chr16:11939198(-) A-I      intronic
chr16:11939223(-) A-I      intronic
chr16:11936503(-) A-I      intronic
chr16:11929153(-) A-I      3'UTR
chr16:11929141(-) A-I      3'UTR
chr16:11928918(-) A-I      3'UTR
chr16:11929208(-) A-I      3'UTR
chr16:11931314(-) A-I      3'UTR
chr16:11928915(-) A-I      3'UTR
chr16:11931319(-) A-I      3'UTR
chr16:11929459(-) A-I      3'UTR
chr16:11931304(-) A-I      3'UTR
chr16:11939863(-) A-I      intronic
chr16:11943204(-) A-I      intronic
chr16:11939788(-) A-I      intronic
chr16:11939180(-) A-I      intronic
chr16:11943237(-) A-I      intronic
chr16:11939215(-) A-I      intronic
chr16:11939113(-) A-I      intronic
chr16:11939700(-) A-I      intronic
chr16:11943751(-) A-I      intronic
chr16:11939857(-) A-I      intronic
chr16:11943244(-) A-I      intronic
chr16:11937132(-) A-I      intronic
chr16:11943177(-) A-I      intronic
chr16:11943116(-) A-I      intronic
chr16:11942749(-) A-I      intronic
chr16:11941169(-) A-I      intronic
chr16:11942999(-) A-I      intronic
chr16:11939668(-) A-I      intronic
chr16:11939703(-) A-I      intronic
chr16:11936498(-) A-I      intronic
chr16:11936328(-) A-I      intronic
chr16:11941988(-) A-I      intronic
chr16:11939817(-) A-I      intronic
chr16:11939862(-) A-I      intronic
chr16:11940104(-) A-I      intronic
chr16:11932186(-) A-I      intronic
chr16:11936750(-) A-I      intronic
chr16:11939099(-) A-I      intronic
chr16:11929447(-) A-I      3'UTR
chr16:11931253(-) A-I      3'UTR
chr16:11930963(-) A-I      3'UTR
chr16:11931402(-) A-I      3'UTR
chr16:11931313(-) A-I      3'UTR
chr16:11931340(-) A-I      3'UTR
chr16:11931471(-) A-I      3'UTR
chr16:11931453(-) A-I      3'UTR
chr16:11931364(-) A-I      3'UTR
chr16:11931255(-) A-I      3'UTR
chr16:11929136(-) A-I      3'UTR
chr16:11931442(-) A-I      3'UTR
chr16:11931480(-) A-I      3'UTR
chr16:11931250(-) A-I      3'UTR
chr16:11928881(-) A-I      3'UTR
chr16:11943209(-) A-I      intronic
chr16:11943916(-) A-I      intronic
chr16:11940238(-) A-I      intronic
chr16:11936728(-) A-I      intronic
chr16:11933101(-) A-I      intronic
chr16:11932676(-) A-I      intronic
chr16:11939836(-) A-I      intronic
chr16:11942583(-) A-I      intronic
chr16:11943061(-) A-I      intronic
chr16:11937536(-) A-I      intronic
chr16:11942492(-) A-I      intronic
chr16:11939681(-) A-I      intronic
chr16:11939227(-) A-I      intronic
chr16:11933111(-) A-I      intronic
chr16:11940060(-) A-I      intronic
chr16:11937127(-) A-I      intronic
chr16:11942811(-) A-I      intronic
chr16:11942799(-) A-I      intronic
chr16:11939743(-) A-I      intronic
chr16:11932551(-) A-I      intronic
chr16:11942444(-) A-I      intronic
chr16:11942987(-) A-I      intronic
chr16:11936368(-) A-I      intronic
chr16:11932602(-) A-I      intronic
chr16:11939170(-) A-I      intronic
chr16:11942773(-) A-I      intronic
chr16:11941952(-) A-I      intronic
chr16:11941892(-) A-I      intronic
chr16:11936036(-) A-I      intronic
chr16:11932479(-) A-I      intronic
chr16:11943131(-) A-I      intronic
chr16:11941137(-) A-I      intronic
chr16:11937697(-) A-I      intronic
chr16:11932159(-) A-I      intronic
chr16:11937569(-) A-I      intronic
chr16:11939808(-) A-I      intronic
chr16:11936783(-) A-I      intronic
chr16:11941961(-) A-I      intronic
chr16:11937460(-) A-I      intronic
chr16:11939224(-) A-I      intronic
chr16:11934166(-) A-I      intronic
chr16:11932213(-) A-I      intronic
chr16:11940165(-) A-I      intronic
chr16:11939663(-) A-I      intronic
chr16:11941852(-) A-I      intronic
chr16:11932469(-) A-I      intronic
chr16:11932966(-) A-I      intronic
chr16:11942772(-) A-I      intronic
chr16:11936916(-) A-I      intronic
chr16:11934340(-) A-I      intronic
chr16:11939201(-) A-I      intronic
chr16:11932122(-) A-I      intronic
chr16:11939210(-) A-I      intronic
chr16:11937558(-) A-I      intronic
chr16:11933057(-) A-I      intronic
chr16:11939127(-) A-I      intronic
chr16:11941954(-) A-I      intronic
chr16:11932221(-) A-I      intronic
chr16:11932183(-) A-I      intronic
chr16:11934188(-) A-I      intronic
chr16:11943096(-) A-I      intronic
chr16:11943157(-) A-I      intronic
chr16:11941110(-) A-I      intronic
chr16:11939690(-) A-I      intronic
chr16:11936630(-) A-I      intronic
chr16:11932292(-) A-I      intronic
chr16:11942047(-) A-I      intronic
chr16:11943000(-) A-I      intronic
chr16:11939162(-) A-I      intronic
chr16:11937469(-) A-I      intronic
chr16:11943921(-) A-I      intronic
chr16:11939993(-) A-I      intronic
chr16:11934234(-) A-I      intronic
chr16:11934365(-) A-I      intronic
chr16:11939676(-) A-I      intronic
chr16:11943245(-) A-I      intronic
chr16:11929483(-) A-I      3'UTR
chr16:11931333(-) A-I      3'UTR
chr16:11928846(-) A-I      3'UTR
chr16:11928820(-) A-I      3'UTR
chr16:11928868(-) A-I      3'UTR
chr16:11931345(-) A-I      3'UTR
chr16:11928887(-) A-I      3'UTR
chr16:11929206(-) A-I      3'UTR
chr16:11929215(-) A-I      3'UTR
chr16:11931083(-) A-I      3'UTR
chr16:11929106(-) A-I      3'UTR
chr16:11928714(-) A-I      3'UTR
chr16:11929177(-) A-I      3'UTR
chr16:11929176(-) A-I      3'UTR
chr16:11928873(-) A-I      3'UTR
chr16:11931474(-) A-I      3'UTR
chr16:11928828(-) A-I      3'UTR
chr16:11930922(-) A-I      3'UTR
chr16:11928736(-) A-I      3'UTR
chr16:11928776(-) A-I      3'UTR
chr16:11931336(-) A-I      3'UTR
chr16:11928851(-) A-I      3'UTR
chr16:11929135(-) A-I      3'UTR
chr16:11928856(-) A-I      3'UTR
chr16:11929207(-) A-I      3'UTR
chr16:11931479(-) A-I      3'UTR
chr16:11928802(-) A-I      3'UTR
chr16:11929546(-) A-I      3'UTR
chr16:11931092(-) A-I      3'UTR
chr16:11928951(-) A-I      3'UTR
chr16:11928913(-) A-I      3'UTR
chr16:11928907(-) A-I      3'UTR
chr16:11928725(-) A-I      3'UTR
chr16:11928886(-) A-I      3'UTR
chr16:11928924(-) A-I      3'UTR
chr16:11928726(-) A-I      3'UTR
chr16:11929448(-) A-I      3'UTR
chr16:11929203(-) A-I      3'UTR
chr16:11929171(-) A-I      3'UTR
chr16:11931386(-) A-I      3'UTR
chr16:11931409(-) A-I      3'UTR
chr16:11931346(-) A-I      3'UTR
chr16:11930995(-) A-I      3'UTR
chr16:11929574(-) A-I      3'UTR
chr16:11928813(-) A-I      3'UTR
chr16:11928859(-) A-I      3'UTR
chr16:11929221(-) A-I      3'UTR
chr16:11929150(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RSL1D1
chr16:11928725(-) A-I exon 3'UTR    22327324
chr16:11928736(-) A-I exon 3'UTR    22327324
chr16:11928951(-) A-I exon 3'UTR    21960545   //22327324
chr16:11929176(-) A-I exon 3'UTR    22327324
chr16:11929483(-) A-I exon 3'UTR    22327324
chr16:11931092(-) A-I exon 3'UTR    22327324
chr16:11931250(-) A-I exon 3'UTR    22028664
chr16:11931253(-) A-I exon 3'UTR    22028664
chr16:11931255(-) A-I exon 3'UTR    22028664
chr16:11931313(-) A-I exon 3'UTR    22028664   //21960545
chr16:11931333(-) A-I exon 3'UTR    22028664
chr16:11931336(-) A-I exon 3'UTR    22028664
chr16:11931340(-) A-I exon 3'UTR    22028664
chr16:11931345(-) A-I exon 3'UTR    22028664
chr16:11931346(-) A-I exon 3'UTR    22028664
chr16:11931364(-) A-I exon 3'UTR    22028664
chr16:11931402(-) A-I exon 3'UTR    22028664
chr16:11931411(-) A-I exon 3'UTR    22028664
chr16:11931442(-) A-I exon 3'UTR    22028664
chr16:11931453(-) A-I exon 3'UTR    22028664
chr16:11931471(-) A-I exon 3'UTR    22028664
chr16:11931479(-) A-I exon 3'UTR    22028664
chr16:11931480(-) A-I exon 3'UTR    22028664
chr16:11928846(-) A-I exon 3'UTR    21960545
chr16:11928846(-) A-G exon 3'UTR    21725310   //22484847
chr16:11928951(-) A-G exon 3'UTR    21725310   //22484847
chr16:11929176(-) A-G exon 3'UTR    21725310   //22484847
chr16:11928725(-) A-G exon 3'UTR    22484847
chr16:11928726(-) A-G exon 3'UTR    22484847
chr16:11928736(-) A-G exon 3'UTR    22484847
chr16:11928820(-) A-G exon 3'UTR    22484847
chr16:11928859(-) A-G exon 3'UTR    22484847
chr16:11928886(-) A-G exon 3'UTR    22484847
chr16:11928924(-) A-G exon 3'UTR    22484847
chr16:11929106(-) A-G exon 3'UTR    22484847
chr16:11929177(-) A-G exon 3'UTR    22484847
chr16:11929203(-) A-G exon 3'UTR    22484847
chr16:11929207(-) A-G exon 3'UTR    22484847
chr16:11929447(-) A-G exon 3'UTR    22484847
chr16:11929483(-) A-G exon 3'UTR    22484847
chr16:11930922(-) A-G exon 3'UTR    22484847
chr16:11931083(-) A-G exon 3'UTR    22484847
chr16:11931092(-) A-G exon 3'UTR    22484847
chr16:11931345(-) A-G exon 3'UTR    22484847
chr16:11931409(-) A-G exon 3'UTR    22484847
chr16:11936916(-) A-G intron -    22484847
chr16:11939201(-) A-G intron -    22484847
chr16:11939227(-) A-G intron -    22484847
chr16:11939857(-) A-G intron -    22484847
chr16:11939862(-) A-G intron -    22484847
chr16:11942602(-) G-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RSL1D1
chr16:11930530-11930531(-) m6A 3'UTR       -
chr16:11930637-11930638(-) m6A 3'UTR       -
chr16:11931214-11931215(-) m6A 3'UTR       24209618//24981863//28052920//27773535//22608085
chr16:11931246-11931247(-) m6A 3'UTR       24209618//24981863//28052920//27773535//22608085
chr16:11931303-11931304(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr16:11931353-11931354(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr16:11931400-11931401(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:11931423-11931424(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr16:11931518-11931519(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr16:11931537-11931538(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr16:11931618-11931619(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr16:11931667-11931668(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:11931760-11931761(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:11931825-11931826(-) m1A 3'UTR//CDS       26863196
chr16:11931849-11931850(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:11931873-11931874(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:11931961-11931962(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr16:11933574-11933575(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr16:11933683-11933684(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr16:11933701-11933702(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr16:11933763-11933764(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr16:11933787-11933788(-) m1A 3'UTR//CDS       26863196
chr16:11933803-11933804(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr16:11935479-11935480(-) m6A exon//intron       24981863
chr16:11935643-11935644(-) m6A 3'UTR//CDS//exon       27773535
chr16:11935659-11935660(-) m6A 3'UTR//CDS//exon       27773535
chr16:11935784-11935785(-) m6A 3'UTR//CDS//exon       27773535
chr16:11935806-11935807(-) m6A 3'UTR//CDS//exon//intron       27773535
chr16:11940684-11940685(-) m6A 3'UTR//CDS//intron       26404942
chr16:11944225-11944226(-) m6A 3'UTR//5'UTR//CDS//exon//intron       27773535
chr16:11945019-11945020(-) m6A 5'UTR//intron       24284625//27773535
chr16:11945267-11945268(-) m6A CDS//exon       24284625//25456834
chr16:11945320-11945321(-) m6A CDS//exon       24284625//25456834//26404942
chr16:11945373-11945374(-) m6A 5'UTR//exon       24284625//25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-210-5p
Cytoplasm Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Exosome Pooled sera     27278097
Exosome Plasma     19289371
Exosome Primary dendritic cells|T cell line (J77)     21505438
Exosome Breast milk     22211110
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Human mast cell line (HMC-1)     24009880
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Follicular fluid     23666971
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Myotube     27396686
Mitochondrion Skeletal muscle cells     27563705
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Nucleus Colon adenocarcinoma cells     20864815
Nucleus Neural progenitor cells     21363885
RSL1D1
Chromatin K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-210-5p
Interactor2: RSL1D1

Evidence Support:


Weak-Evidence Small RNA sequencing
Prediction-Evidence miRNet
Support Database ViRBase

References:


PMID 33045840 Target region None
Source ViRBase Interactor1 expression Upregulation
Tissue or cell line PBMC cells Interactor2 expression Downregulation
Description FIG. 2.(B) upregulated miRNAs with their predicted downregulated gene targets.

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