Detail Information

Basic Information:


  VIRBase ID:  

HHID00096502

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-4677-3p:           ABCA10:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-4677-3p ABCA10
miRBase
Accession/Entrez ID		 MIMAT0019761 10349
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - EST698739

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-4677-3p
rs1254655423 chr1:243346244    A/G
rs1481229343 chr1:243346235    C/T
rs771267188 chr1:243346242    C/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ABCA10
chr17:67201104(-) A-I      intronic
chr17:67201111(-) A-I      intronic
chr17:67201147(-) A-I      intronic
chr17:67201082(-) A-I      intronic
chr17:67201125(-) A-I      intronic
chr17:67201139(-) A-I      intronic
chr17:67201144(-) A-I      intronic
chr17:67201174(-) A-I      intronic
chr17:67201182(-) A-I      intronic
chr17:67201186(-) A-I      intronic
chr17:67201267(-) A-I      intronic
chr17:67204496(-) A-I      intronic
chr17:67204497(-) A-I      intronic
chr17:67204960(-) A-I      intronic
chr17:67234289(-) A-I      intronic
chr17:67238691(-) A-I      intronic
chr17:67238698(-) A-I      intronic
chr17:67238702(-) A-I      intronic
chr17:67238738(-) A-I      intronic
chr17:67238743(-) A-I      intronic
chr17:67238869(-) A-I      intronic
chr17:67239920(-) A-I      intronic
chr17:67196945(-) A-I      intronic
chr17:67196930(-) A-I      intronic
chr17:67206495(-) A-I      intronic
chr17:67206498(-) A-I      intronic
chr17:67206505(-) A-I      intronic
chr17:67206511(-) A-I      intronic
chr17:67206526(-) A-I      intronic
chr17:67206532(-) A-I      intronic
chr17:67196922(-) A-I      intronic
chr17:67156638(-) A-I      intronic
chr17:67156636(-) A-I      intronic
chr17:67206533(-) A-I      intronic
chr17:67206575(-) A-I      intronic
chr17:67234047(-) A-I      intronic
chr17:67204961(-) A-I      intronic
chr17:67196946(-) A-I      intronic
chr17:67206359(-) A-I      intronic
chr17:67206442(-) A-I      intronic
chr17:67206446(-) A-I      intronic
chr17:67206463(-) A-I      intronic
chr17:67206469(-) A-I      intronic
chr17:67234117(-) A-I      intronic
chr17:67234221(-) A-I      intronic
chr17:67198205(-) A-I      intronic
chr17:67198100(-) A-I      intronic
chr17:67198094(-) A-I      intronic
chr17:67198092(-) A-I      intronic
chr17:67198088(-) A-I      intronic
chr17:67197994(-) A-I      intronic
chr17:67196992(-) A-I      intronic
chr17:67240025(-) A-I      intronic
chr17:67156591(-) A-I      intronic
chr17:67238867(-) A-I      intronic
chr17:67156665(-) A-I      intronic
chr17:67238798(-) A-I      intronic
chr17:67166178(-) A-I      intronic
chr17:67156608(-) A-I      intronic
chr17:67198137(-) A-I      intronic
chr17:67204490(-) A-I      intronic
chr17:67234181(-) A-I      intronic
chr17:67238658(-) A-I      intronic
chr17:67238609(-) A-I      intronic
chr17:67239821(-) A-I      intronic
chr17:67156515(-) A-I      intronic
chr17:67198038(-) A-I      intronic
chr17:67206580(-) A-I      intronic
chr17:67238855(-) A-I      intronic
chr17:67201026(-) A-I      intronic
chr17:67201183(-) A-I      intronic
chr17:67239907(-) A-I      intronic
chr17:67239963(-) A-I      intronic
chr17:67198022(-) A-I      intronic
chr17:67198047(-) A-I      intronic
chr17:67239957(-) A-I      intronic
chr17:67204324(-) A-I      intronic
chr17:67159160(-) A-I      intronic
chr17:67238717(-) A-I      intronic
chr17:67238860(-) A-I      intronic
chr17:67159116(-) A-I      intronic
chr17:67156582(-) A-I      intronic
chr17:67239917(-) A-I      intronic
chr17:67205100(-) A-I      intronic
chr17:67239782(-) A-I      intronic
chr17:67177183(-) A-I      intronic
chr17:67239944(-) A-I      intronic
chr17:67205088(-) A-I      intronic
chr17:67205161(-) A-I      intronic
chr17:67237186(-) A-I      intronic
chr17:67198097(-) A-I      intronic
chr17:67156701(-) A-I      intronic
chr17:67205107(-) A-I      intronic
chr17:67240003(-) A-I      intronic
chr17:67198093(-) A-I      intronic
chr17:67238808(-) A-I      intronic
chr17:67201223(-) A-I      intronic
chr17:67206611(-) A-I      intronic
chr17:67239773(-) A-I      intronic
chr17:67150649(-) A-I      intronic
chr17:67201052(-) A-I      intronic
chr17:67238734(-) A-I      intronic
chr17:67238770(-) A-I      intronic
chr17:67238861(-) A-I      intronic
chr17:67206603(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ABCA10
chr17:67217429(-) A-I intron -    22327324
chr17:67217429(-) C-T intron -    22484847
chr17:67239773(-) A-G intron -    22484847
chr17:67239782(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ABCA10
chr17:67143437-67143438(-) m6A 3'UTR       -
chr17:67143555-67143556(-) m6A 3'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-4677-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
ABCA10
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-4677-3p
Interactor2: ABCA10

Evidence Support:


Weak-Evidence Small RNA sequencing
Prediction-Evidence miRNet
Support Database ViRBase

References:


PMID 33045840 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line PBMC cells Interactor2 expression Upregulation
Description FIG. 2.(A) Downregulated miRNAs with their predicted upregulated gene targets.

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