Detail Information

Basic Information:


  VIRBase ID:  

HHID00096500

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-4677-3p:           MPZL1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-4677-3p MPZL1
miRBase
Accession/Entrez ID		 MIMAT0019761 9019
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - MPZL1b//PZR//PZR1b//PZRa//PZRb

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-4677-3p
rs1254655423 chr1:243346244    A/G
rs1481229343 chr1:243346235    C/T
rs771267188 chr1:243346242    C/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MPZL1
chr1:167702922(+) A-I      intronic
chr1:167710371(+) A-I      intronic
chr1:167702744(+) A-I      intronic
chr1:167710303(+) A-I      intronic
chr1:167698293(+) A-I      intronic
chr1:167698419(+) A-I      intronic
chr1:167700462(+) A-I      intronic
chr1:167711490(+) A-I      intronic
chr1:167727284(+) A-I      intronic
chr1:167707227(+) A-I      intronic
chr1:167708291(+) A-I      intronic
chr1:167711163(+) A-I      intronic
chr1:167747447(+) A-I      intronic
chr1:167701818(+) A-I      intronic
chr1:167700501(+) A-I      intronic
chr1:167711143(+) A-I      intronic
chr1:167711020(+) A-I      intronic
chr1:167710680(+) A-I      intronic
chr1:167710627(+) A-I      intronic
chr1:167710511(+) A-I      intronic
chr1:167700813(+) A-I      intronic
chr1:167747438(+) A-I      intronic
chr1:167710592(+) A-I      intronic
chr1:167710494(+) A-I      intronic
chr1:167707429(+) A-I      intronic
chr1:167710493(+) A-I      intronic
chr1:167701897(+) A-I      intronic
chr1:167700937(+) A-I      intronic
chr1:167732530(+) A-I      intronic
chr1:167727248(+) A-I      intronic
chr1:167711250(+) A-I      intronic
chr1:167701656(+) A-I      intronic
chr1:167711110(+) A-I      intronic
chr1:167701902(+) A-I      intronic
chr1:167700949(+) A-I      intronic
chr1:167708296(+) A-I      intronic
chr1:167702780(+) A-I      intronic
chr1:167702079(+) A-I      intronic
chr1:167701934(+) A-I      intronic
chr1:167729717(+) A-I      intronic
chr1:167700754(+) A-I      intronic
chr1:167732567(+) A-I      intronic
chr1:167711173(+) A-I      intronic
chr1:167700748(+) A-I      intronic
chr1:167710743(+) A-I      intronic
chr1:167700857(+) A-I      intronic
chr1:167747571(+) A-I      intronic
chr1:167703068(+) A-I      intronic
chr1:167729581(+) A-I      intronic
chr1:167729576(+) A-I      intronic
chr1:167710354(+) A-I      intronic
chr1:167711302(+) A-I      intronic
chr1:167703037(+) A-I      intronic
chr1:167748702(+) A-I      intronic
chr1:167698360(+) A-I      intronic
chr1:167708385(+) A-I      intronic
chr1:167710312(+) A-I      intronic
chr1:167710759(+) A-I      intronic
chr1:167711409(+) A-I      intronic
chr1:167700526(+) A-I      intronic
chr1:167701815(+) A-I      intronic
chr1:167698427(+) A-I      intronic
chr1:167700882(+) A-I      intronic
chr1:167743525(+) A-I      intronic
chr1:167708308(+) A-I      intronic
chr1:167700510(+) A-I      intronic
chr1:167698253(+) A-I      intronic
chr1:167716588(+) A-I      intronic
chr1:167700523(+) A-I      intronic
chr1:167710333(+) A-I      intronic
chr1:167710357(+) A-I      intronic
chr1:167708432(+) A-I      intronic
chr1:167697332(+) A-I      intronic
chr1:167729646(+) A-I      intronic
chr1:167748374(+) A-I      intronic
chr1:167700860(+) A-I      intronic
chr1:167711105(+) A-I      intronic
chr1:167710776(+) A-I      intronic
chr1:167711149(+) A-I      intronic
chr1:167707368(+) A-I      intronic
chr1:167711301(+) A-I      intronic
chr1:167748196(+) A-I      intronic
chr1:167729714(+) A-I      intronic
chr1:167713743(+) A-I      intronic
chr1:167713842(+) A-I      intronic
chr1:167729544(+) A-I      intronic
chr1:167700553(+) A-I      intronic
chr1:167743546(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MPZL1
chr1:167700510(+) A-G intron -    22484847
chr1:167700857(+) A-G intron -    22484847
chr1:167700860(+) A-G intron -    22484847
chr1:167700882(+) A-G intron -    22484847
chr1:167701902(+) A-G intron -    22484847
chr1:167701934(+) A-G intron -    22484847
chr1:167702780(+) A-G intron -    22484847
chr1:167707368(+) A-G intron -    22484847
chr1:167708296(+) A-G intron -    22484847
chr1:167710312(+) A-G intron -    22484847
chr1:167710354(+) A-G intron -    22484847
chr1:167710743(+) A-G intron -    22484847
chr1:167710759(+) A-G intron -    22484847
chr1:167710776(+) A-G intron -    22484847
chr1:167711173(+) A-G intron -    22484847
chr1:167711302(+) A-G intron -    22484847
chr1:167732567(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MPZL1
chr1:167690871-167690872(+) m6A exon       -
chr1:167690914-167690915(+) m6A exon       25456834
chr1:167690931-167690932(+) m6A exon       25456834
chr1:167690943-167690944(+) m6A exon       25456834
chr1:167690951-167690952(+) m6A exon       25456834
chr1:167690956-167690957(+) m6A exon       25456834
chr1:167691129-167691130(+) m6A exon       25456834
chr1:167691184-167691185(+) m6A exon       25456834//24981863
chr1:167691243-167691244(+) m6A 5'UTR//exon       24209618//25456834//24981863//22608085
chr1:167691337-167691338(+) m6A 5'UTR//exon       24209618//25456834//24981863//27371828//22608085
chr1:167691431-167691432(+) m6A CDS//exon       24209618
chr1:167756485-167756486(+) m6A exon//intron       24284625
chr1:167757081-167757082(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085
chr1:167757094-167757095(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085
chr1:167757171-167757172(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:167757189-167757190(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:167757194-167757195(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:167757199-167757200(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:167757204-167757205(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:167757250-167757251(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:167757262-167757263(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:167759104-167759105(+) m6A 3'UTR       24981863
chr1:167759128-167759129(+) m6A 3'UTR       24981863
chr1:167759204-167759205(+) m6A 3'UTR       24981863//26404942
chr1:167759233-167759234(+) m6A 3'UTR       24981863//26404942
chr1:167759553-167759554(+) m6A 3'UTR       24284625
chr1:167759562-167759563(+) m6A 3'UTR       24284625
chr1:167759661-167759662(+) m6A 3'UTR       24284625//25456834//22575960
chr1:167759714-167759715(+) m6A 3'UTR       24284625//25456834//22575960
chr1:167759808-167759809(+) m6A 3'UTR       24284625//26404942
chr1:167759861-167759862(+) m6A 3'UTR       24284625//26404942

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-4677-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
MPZL1
Chromatin K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-4677-3p
Interactor2: MPZL1

Evidence Support:


Weak-Evidence Small RNA sequencing
Prediction-Evidence miRNet
Support Database ViRBase

References:


PMID 33045840 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line PBMC cells Interactor2 expression Upregulation
Description FIG. 2.(A) Downregulated miRNAs with their predicted upregulated gene targets.

Starting a new search, please wait ...