Detail Information

Basic Information:


  VIRBase ID:  

HHID00096420

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-150-3p:           SCD5:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-150-3p SCD5
miRBase
Accession/Entrez ID		 MIMAT0004610 79966
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ACOD4//DFNA79//FADS4//HSCD5//SCD2//SCD4

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-150-3p
rs1222701309 chr19:49500798    T/C
rs1268655804 chr19:49500801    C/T
rs1479556921 chr19:49500803    C/A
rs900688289 chr19:49500802    C/T
rs1184577625 chr19:49500811    T/C
rs1270941119 chr19:49500816    C/T
rs1413039185 chr19:49500817    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SCD5
chr4:83579360(-) A-I      intronic
chr4:83579365(-) A-I      intronic
chr4:83579372(-) A-I      intronic
chr4:83579383(-) A-I      intronic
chr4:83673051(-) A-I      intronic
chr4:83608317(-) A-I      intronic
chr4:83608224(-) A-I      intronic
chr4:83716923(-) A-I      intronic
chr4:83616504(-) A-I      intronic
chr4:83579384(-) A-I      intronic
chr4:83679357(-) A-I      intronic
chr4:83664927(-) A-I      intronic
chr4:83664823(-) A-I      intronic
chr4:83621858(-) A-I      intronic
chr4:83621845(-) A-I      intronic
chr4:83621831(-) A-I      intronic
chr4:83657932(-) A-I      intronic
chr4:83717360(-) A-I      intronic
chr4:83709720(-) A-I      intronic
chr4:83709721(-) A-I      intronic
chr4:83709832(-) A-I      intronic
chr4:83716888(-) A-I      intronic
chr4:83616522(-) A-I      intronic
chr4:83616515(-) A-I      intronic
chr4:83616514(-) A-I      intronic
chr4:83616505(-) A-I      intronic
chr4:83679496(-) A-I      intronic
chr4:83657931(-) A-I      intronic
chr4:83579344(-) A-I      intronic
chr4:83579345(-) A-I      intronic
chr4:83579351(-) A-I      intronic
chr4:83579390(-) A-I      intronic
chr4:83579401(-) A-I      intronic
chr4:83579352(-) A-I      intronic
chr4:83579403(-) A-I      intronic
chr4:83616590(-) A-I      intronic
chr4:83616620(-) A-I      intronic
chr4:83616642(-) A-I      intronic
chr4:83616588(-) A-I      intronic
chr4:83566301(-) A-I      intronic
chr4:83566335(-) A-I      intronic
chr4:83566429(-) A-I      intronic
chr4:83575271(-) A-I      intronic
chr4:83620634(-) A-I      intronic
chr4:83620891(-) A-I      intronic
chr4:83621008(-) A-I      intronic
chr4:83621270(-) A-I      intronic
chr4:83621308(-) A-I      intronic
chr4:83621926(-) A-I      intronic
chr4:83621934(-) A-I      intronic
chr4:83623360(-) A-I      intronic
chr4:83623374(-) A-I      intronic
chr4:83640795(-) A-I      intronic
chr4:83646856(-) A-I      intronic
chr4:83708971(-) A-I      intronic
chr4:83708964(-) A-I      intronic
chr4:83683608(-) A-I      intronic
chr4:83683129(-) A-I      intronic
chr4:83683108(-) A-I      intronic
chr4:83681585(-) A-I      intronic
chr4:83552018(-) A-I      3'UTR
chr4:83552005(-) A-I      3'UTR
chr4:83552178(-) A-I      3'UTR
chr4:83552182(-) A-I      3'UTR
chr4:83552070(-) A-I      3'UTR
chr4:83552036(-) A-I      3'UTR
chr4:83552177(-) A-I      3'UTR
chr4:83552142(-) A-I      3'UTR
chr4:83552050(-) A-I      3'UTR
chr4:83552040(-) A-I      3'UTR
chr4:83552019(-) A-I      3'UTR
chr4:83709636(-) A-I      intronic
chr4:83709641(-) A-I      intronic
chr4:83709798(-) A-I      intronic
chr4:83683669(-) A-I      intronic
chr4:83574225(-) A-I      intronic
chr4:83683069(-) A-I      intronic
chr4:83709776(-) A-I      intronic
chr4:83681726(-) A-I      intronic
chr4:83709682(-) A-I      intronic
chr4:83664520(-) A-I      intronic
chr4:83574301(-) A-I      intronic
chr4:83709681(-) A-I      intronic
chr4:83709743(-) A-I      intronic
chr4:83683053(-) A-I      intronic
chr4:83583374(-) A-I      intronic
chr4:83695120(-) A-I      intronic
chr4:83607358(-) A-I      intronic
chr4:83677765(-) A-I      intronic
chr4:83606742(-) A-I      intronic
chr4:83620851(-) A-I      intronic
chr4:83709711(-) A-I      intronic
chr4:83678159(-) A-I      intronic
chr4:83623570(-) A-I      intronic
chr4:83642195(-) A-I      intronic
chr4:83583437(-) A-I      intronic
chr4:83709649(-) A-I      intronic
chr4:83571701(-) A-I      intronic
chr4:83641051(-) A-I      intronic
chr4:83621336(-) A-I      intronic
chr4:83713866(-) A-I      intronic
chr4:83653489(-) A-I      intronic
chr4:83664948(-) A-I      intronic
chr4:83657438(-) A-I      intronic
chr4:83600319(-) A-I      intronic
chr4:83621230(-) A-I      intronic
chr4:83683502(-) A-I      intronic
chr4:83683081(-) A-I      intronic
chr4:83692295(-) A-I      intronic
chr4:83683543(-) A-I      intronic
chr4:83583438(-) A-I      intronic
chr4:83571656(-) A-I      intronic
chr4:83623333(-) A-I      intronic
chr4:83657234(-) A-I      intronic
chr4:83552096(-) A-I      3'UTR
chr4:83552181(-) A-I      3'UTR
chr4:83552147(-) A-I      3'UTR
chr4:83552099(-) A-I      3'UTR
chr4:83656056(-) A-I      intronic
chr4:83641053(-) A-I      intronic
chr4:83664459(-) A-I      intronic
chr4:83603880(-) A-I      intronic
chr4:83632759(-) A-I      intronic
chr4:83621226(-) A-I      intronic
chr4:83713834(-) A-I      intronic
chr4:83574148(-) A-I      intronic
chr4:83709660(-) A-I      intronic
chr4:83664803(-) A-I      intronic
chr4:83583334(-) A-I      intronic
chr4:83695156(-) A-I      intronic
chr4:83715845(-) A-I      intronic
chr4:83600338(-) A-I      intronic
chr4:83642280(-) A-I      intronic
chr4:83709742(-) A-I      intronic
chr4:83683244(-) A-I      intronic
chr4:83687024(-) A-I      intronic
chr4:83572901(-) A-I      intronic
chr4:83574194(-) A-I      intronic
chr4:83681622(-) A-I      intronic
chr4:83607313(-) A-I      intronic
chr4:83692284(-) A-I      intronic
chr4:83583348(-) A-I      intronic
chr4:83695223(-) A-I      intronic
chr4:83713853(-) A-I      intronic
chr4:83716010(-) A-I      intronic
chr4:83715931(-) A-I      intronic
chr4:83695159(-) A-I      intronic
chr4:83574089(-) A-I      intronic
chr4:83717301(-) A-I      intronic
chr4:83620887(-) A-I      intronic
chr4:83709708(-) A-I      intronic
chr4:83683589(-) A-I      intronic
chr4:83574166(-) A-I      intronic
chr4:83692258(-) A-I      intronic
chr4:83664445(-) A-I      intronic
chr4:83683668(-) A-I      intronic
chr4:83583350(-) A-I      intronic
chr4:83621144(-) A-I      intronic
chr4:83692222(-) A-I      intronic
chr4:83612246(-) A-I      intronic
chr4:83683590(-) A-I      intronic
chr4:83568250(-) A-I      intronic
chr4:83621258(-) A-I      intronic
chr4:83695058(-) A-I      intronic
chr4:83692381(-) A-I      intronic
chr4:83709771(-) A-I      intronic
chr4:83709629(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SCD5
chr4:83709629(-) A-I intron -    15342557
chr4:83709660(-) A-I intron -    15342557
chr4:83709737(-) A-I intron -    15342557   //15258596
chr4:83709781(-) A-I intron -    15342557   //15258596
chr4:83709839(-) A-I intron -    15342557   //15258596
chr4:83710401(-) A-I intron -    15342557
chr4:83710690(-) A-I intron -    15342557
chr4:83715845(-) A-I intron -    15545495
chr4:83715879(-) A-I intron -    15545495
chr4:83715931(-) A-I intron -    15545495
chr4:83715935(-) A-I intron -    15545495
chr4:83715941(-) A-I intron -    15545495

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SCD5
chr4:83552471-83552472(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chr4:83552478-83552479(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chr4:83552492-83552493(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chr4:83552499-83552500(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chr4:83602039-83602040(-) m6A CDS       -
chr4:83615893-83615894(-) m6A intron       -
chr4:83615905-83615906(-) m6A intron       -
chr4:83719559-83719560(-) m6A CDS       27773536
chr4:83719808-83719809(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr4:83719856-83719857(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-150-3p
Exosome Saliva     19627513
Exosome Jurkat-derived T cell line (J77cl20)     21505438
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells     -
SCD5
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Ribosome HEK-293 cells     22199352

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-150-3p
Ginsenoside Rh2 119307 Drug interaction    RC00006970
Androstanolone 10635 Drug interaction    RC00006969
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-150-3p
Imatinib 5291       25349971

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-150-3p
Interactor2: SCD5

Evidence Support:


Weak-Evidence Small RNA sequencing
Prediction-Evidence miRNet
Support Database ViRBase

References:


PMID 33045840 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line PBMC cells Interactor2 expression Upregulation
Description FIG. 2.(A) Downregulated miRNAs with their predicted upregulated gene targets.

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