Detail Information

Basic Information:


  VIRBase ID:  

HHID00096400

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-16-2-3p:           PRRG4:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-16-2-3p PRRG4
miRBase
Accession/Entrez ID
MIMAT0004518 79056
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - PRGP4//TMG4

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-16-2-3p
rs1341798864 chr3:160404818    A/C
rs373202341 chr3:160404806    C/T
rs768780684 chr3:160404809    T/C
rs768780684 chr3:160404809    T/G
rs746992239 chr3:160404798    C/CA
rs775368833 chr3:160404800    A/G
rs775368833 chr3:160404800    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PRRG4
chr11:32875983(+) A-I      3'UTR
chr11:32875984(+) A-I      3'UTR
chr11:32878836(+) A-I      3'UTR
chr11:32867463(+) A-I      intronic
chr11:32878448(+) A-I      3'UTR
chr11:32878801(+) A-I      3'UTR
chr11:32878833(+) A-I      3'UTR
chr11:32878600(+) A-I      3'UTR
chr11:32878616(+) A-I      3'UTR
chr11:32878838(+) A-I      3'UTR
chr11:32867523(+) A-I      intronic
chr11:32867476(+) A-I      intronic
chr11:32878638(+) A-I      3'UTR
chr11:32875953(+) A-I      3'UTR
chr11:32867522(+) A-I      intronic
chr11:32878906(+) A-I      3'UTR
chr11:32878652(+) A-I      3'UTR
chr11:32867520(+) A-I      intronic
chr11:32875961(+) A-I      3'UTR
chr11:32875950(+) A-I      3'UTR
chr11:32878658(+) A-I      3'UTR
chr11:32878949(+) A-I      3'UTR
chr11:32875221(+) A-I      3'UTR
chr11:32875222(+) A-I      3'UTR
chr11:32875283(+) A-I      3'UTR
chr11:32875925(+) A-I      3'UTR
chr11:32875940(+) A-I      3'UTR
chr11:32875941(+) A-I      3'UTR
chr11:32875945(+) A-I      3'UTR
chr11:32864623(+) A-I      intronic
chr11:32864651(+) A-I      intronic
chr11:32867425(+) A-I      intronic
chr11:32856419(+) A-I      intronic
chr11:32856472(+) A-I      intronic
chr11:32870240(+) A-I      intronic
chr11:32856477(+) A-I      intronic
chr11:32870398(+) A-I      intronic
chr11:32859167(+) A-I      intronic
chr11:32859168(+) A-I      intronic
chr11:32859184(+) A-I      intronic
chr11:32859203(+) A-I      intronic
chr11:32859204(+) A-I      intronic
chr11:32859229(+) A-I      intronic
chr11:32864589(+) A-I      intronic
chr11:32864663(+) A-I      intronic
chr11:32870403(+) A-I      intronic
chr11:32859304(+) A-I      intronic
chr11:32867824(+) A-I      intronic
chr11:32859313(+) A-I      intronic
chr11:32859324(+) A-I      intronic
chr11:32870433(+) A-I      intronic
chr11:32870463(+) A-I      intronic
chr11:32867643(+) A-I      intronic
chr11:32864669(+) A-I      intronic
chr11:32864119(+) A-I      intronic
chr11:32864145(+) A-I      intronic
chr11:32864146(+) A-I      intronic
chr11:32864151(+) A-I      intronic
chr11:32876013(+) A-I      3'UTR
chr11:32875319(+) A-I      3'UTR
chr11:32878765(+) A-I      3'UTR
chr11:32878957(+) A-I      3'UTR
chr11:32878668(+) A-I      3'UTR
chr11:32878561(+) A-I      3'UTR
chr11:32876094(+) A-I      3'UTR
chr11:32878797(+) A-I      3'UTR
chr11:32875277(+) A-I      3'UTR
chr11:32875892(+) A-I      3'UTR
chr11:32878980(+) A-I      3'UTR
chr11:32875286(+) A-I      3'UTR
chr11:32878398(+) A-I      3'UTR
chr11:32875306(+) A-I      3'UTR
chr11:32878442(+) A-I      3'UTR
chr11:32878612(+) A-I      3'UTR
chr11:32878477(+) A-I      3'UTR
chr11:32875198(+) A-I      3'UTR
chr11:32878639(+) A-I      3'UTR
chr11:32878871(+) A-I      3'UTR
chr11:32875295(+) A-I      3'UTR
chr11:32878383(+) A-I      3'UTR
chr11:32878443(+) A-I      3'UTR
chr11:32875830(+) A-I      3'UTR
chr11:32875926(+) A-I      3'UTR
chr11:32876032(+) A-I      3'UTR
chr11:32875280(+) A-I      3'UTR
chr11:32878478(+) A-I      3'UTR
chr11:32878897(+) A-I      3'UTR
chr11:32878958(+) A-I      3'UTR
chr11:32875329(+) A-I      3'UTR
chr11:32878613(+) A-I      3'UTR
chr11:32878717(+) A-I      3'UTR
chr11:32875358(+) A-I      3'UTR
chr11:32878917(+) A-I      3'UTR
chr11:32875276(+) A-I      3'UTR
chr11:32875356(+) A-I      3'UTR
chr11:32878429(+) A-I      3'UTR
chr11:32878918(+) A-I      3'UTR
chr11:32878490(+) A-I      3'UTR
chr11:32875916(+) A-I      3'UTR
chr11:32875361(+) A-I      3'UTR
chr11:32875924(+) A-I      3'UTR
chr11:32875213(+) A-I      3'UTR
chr11:32878919(+) A-I      3'UTR
chr11:32875142(+) A-I      3'UTR
chr11:32878719(+) A-I      3'UTR
chr11:32878737(+) A-I      3'UTR
chr11:32878481(+) A-I      3'UTR
chr11:32878402(+) A-I      3'UTR
chr11:32875957(+) A-I      3'UTR
chr11:32867817(+) A-I      intronic
chr11:32864005(+) A-I      intronic
chr11:32872526(+) A-I      intronic
chr11:32864598(+) A-I      intronic
chr11:32864603(+) A-I      intronic
chr11:32859372(+) A-I      intronic
chr11:32867790(+) A-I      intronic
chr11:32874384(+) A-I      intronic
chr11:32867098(+) A-I      intronic
chr11:32867818(+) A-I      intronic
chr11:32870651(+) A-I      intronic
chr11:32863087(+) A-I      intronic
chr11:32859922(+) A-I      intronic
chr11:32867137(+) A-I      intronic
chr11:32859293(+) A-I      intronic
chr11:32866916(+) A-I      intronic
chr11:32868974(+) A-I      intronic
chr11:32878729(+) A-I      3'UTR
chr11:32878798(+) A-I      3'UTR
chr11:32876025(+) A-I      3'UTR
chr11:32875209(+) A-I      3'UTR
chr11:32878827(+) A-I      3'UTR
chr11:32875838(+) A-I      3'UTR
chr11:32878640(+) A-I      3'UTR
chr11:32878567(+) A-I      3'UTR
chr11:32878791(+) A-I      3'UTR
chr11:32878599(+) A-I      3'UTR
chr11:32875993(+) A-I      3'UTR
chr11:32878971(+) A-I      3'UTR
chr11:32876075(+) A-I      3'UTR
chr11:32875847(+) A-I      3'UTR
chr11:32875318(+) A-I      3'UTR
chr11:32878877(+) A-I      3'UTR
chr11:32878504(+) A-I      3'UTR
chr11:32876024(+) A-I      3'UTR
chr11:32878661(+) A-I      3'UTR
chr11:32878720(+) A-I      3'UTR
chr11:32878575(+) A-I      3'UTR
chr11:32878815(+) A-I      3'UTR
chr11:32876006(+) A-I      3'UTR
chr11:32878772(+) A-I      3'UTR
chr11:32875846(+) A-I      3'UTR
chr11:32878543(+) A-I      3'UTR
chr11:32878403(+) A-I      3'UTR
chr11:32878446(+) A-I      3'UTR
chr11:32875923(+) A-I      3'UTR
chr11:32875253(+) A-I      3'UTR
chr11:32878482(+) A-I      3'UTR
chr11:32878882(+) A-I      3'UTR
chr11:32878959(+) A-I      3'UTR
chr11:32878621(+) A-I      3'UTR
chr11:32878495(+) A-I      3'UTR
chr11:32875188(+) A-I      3'UTR
chr11:32876116(+) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PRRG4
chr11:32859242(+) T-C intron -    22484847
chr11:32875318(+) A-G intron -    22484847
chr11:32875840(+) G-A intron -    22484847
chr11:32876024(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PRRG4
chr11:32874895-32874896(+) m6A CDS       -
chr11:32874961-32874962(+) m6A CDS       24981863//22608085
chr11:32874985-32874986(+) m6A CDS       24981863//22608085
chr11:32875174-32875175(+) m6A 3'UTR       22608085
chr11:32875197-32875198(+) m6A 3'UTR       22608085
chr11:32875294-32875295(+) m6A 3'UTR       24981863//22608085
chr11:32875363-32875364(+) m6A 3'UTR       24981863//27773535//22608085
chr11:32875478-32875479(+) m6A 3'UTR       25456834//24981863//27773535//22608085
chr11:32875488-32875489(+) m6A 3'UTR       25456834//24981863//27773535//22608085
chr11:32875515-32875516(+) m6A 3'UTR       25456834//24981863//27773535//22608085
chr11:32875580-32875581(+) m6A 3'UTR       25456834//24981863//22608085
chr11:32875586-32875587(+) m6A 3'UTR       25456834//24981863//22608085
chr11:32875613-32875614(+) m6A 3'UTR       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-16-2-3p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
Exosome Plasma     23663360
Exosome Blood|Chronic lymphocytic leukemia cells|Tongue tissue     -
Microvesicle Serum     24797360
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
PRRG4
Exosome Blood     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-16-2-3p
Interactor2: PRRG4

Evidence Support:


Weak-Evidence Small RNA sequencing
Prediction-Evidence miRNet
Support Database ViRBase

References:


PMID 33045840 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line PBMC cells Interactor2 expression Upregulation
Description FIG. 2.(A) Downregulated miRNAs with their predicted upregulated gene targets.

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