Detail Information

Basic Information:


  VIRBase ID:  

HHID00096399

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-16-2-3p:           BCAP29:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-16-2-3p BCAP29
miRBase
Accession/Entrez ID		 MIMAT0004518 55973
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - BAP29

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-16-2-3p
rs1341798864 chr3:160404818    A/C
rs373202341 chr3:160404806    C/T
rs768780684 chr3:160404809    T/C
rs768780684 chr3:160404809    T/G
rs746992239 chr3:160404798    C/CA
rs775368833 chr3:160404800    A/G
rs775368833 chr3:160404800    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BCAP29
chr7:107226316(+) A-I      intronic
chr7:107227284(+) A-I      intronic
chr7:107227319(+) A-I      intronic
chr7:107251826(+) A-I      intronic
chr7:107257270(+) A-I      intronic
chr7:107227266(+) A-I      intronic
chr7:107257264(+) A-I      intronic
chr7:107248282(+) A-I      intronic
chr7:107257227(+) A-I      intronic
chr7:107227259(+) A-I      intronic
chr7:107255750(+) A-I      Syn:Stp->Stp
chr7:107226357(+) A-I      intronic
chr7:107227253(+) A-I      intronic
chr7:107227242(+) A-I      intronic
chr7:107227194(+) A-I      intronic
chr7:107248224(+) A-I      intronic
chr7:107248120(+) A-I      intronic
chr7:107226334(+) A-I      intronic
chr7:107255973(+) A-I      3'UTR
chr7:107255921(+) A-I      3'UTR
chr7:107255911(+) A-I      3'UTR
chr7:107257247(+) A-I      intronic
chr7:107239239(+) A-I      intronic
chr7:107227340(+) A-I      intronic
chr7:107257253(+) A-I      intronic
chr7:107226426(+) A-I      intronic
chr7:107239289(+) A-I      intronic
chr7:107227228(+) A-I      intronic
chr7:107247651(+) A-I      intronic
chr7:107227224(+) A-I      intronic
chr7:107226274(+) A-I      intronic
chr7:107257215(+) A-I      intronic
chr7:107226230(+) A-I      intronic
chr7:107239315(+) A-I      intronic
chr7:107247749(+) A-I      intronic
chr7:107257384(+) A-I      intronic
chr7:107239270(+) A-I      intronic
chr7:107231190(+) A-I      intronic
chr7:107257314(+) A-I      intronic
chr7:107251734(+) A-I      intronic
chr7:107255857(+) A-I      3'UTR
chr7:107255838(+) A-I      3'UTR
chr7:107227298(+) A-I      intronic
chr7:107226333(+) A-I      intronic
chr7:107257323(+) A-I      intronic
chr7:107224899(+) A-I      intronic
chr7:107226260(+) A-I      intronic
chr7:107257446(+) A-I      intronic
chr7:107231117(+) A-I      intronic
chr7:107247642(+) A-I      intronic
chr7:107247712(+) A-I      intronic
chr7:107257349(+) A-I      intronic
chr7:107231125(+) A-I      intronic
chr7:107248345(+) A-I      intronic
chr7:107231121(+) A-I      intronic
chr7:107227436(+) A-I      intronic
chr7:107227459(+) A-I      intronic
chr7:107227384(+) A-I      intronic
chr7:107227463(+) A-I      intronic
chr7:107257203(+) A-I      intronic
chr7:107227437(+) A-I      intronic
chr7:107227450(+) A-I      intronic
chr7:107227237(+) A-I      intronic
chr7:107257245(+) A-I      intronic
chr7:107257207(+) A-I      intronic
chr7:107226235(+) A-I      intronic
chr7:107227312(+) A-I      intronic
chr7:107237741(+) A-I      intronic
chr7:107247625(+) A-I      intronic
chr7:107248250(+) A-I      intronic
chr7:107226278(+) A-I      intronic
chr7:107226368(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED BCAP29
chr7:107226325(+) A-I intron -    15342557
chr7:107226333(+) A-I intron -    15342557
chr7:107226684(+) A-I intron -    15342557
chr7:107226956(+) A-I intron -    15342557
chr7:107227223(+) A-I intron -    15342557
chr7:107227224(+) A-I intron -    15342557
chr7:107227228(+) A-I intron -    15342557
chr7:107226368(+) A-G intron -    22484847
chr7:107226426(+) A-G intron -    22484847
chr7:107227228(+) A-G intron -    22484847
chr7:107239307(+) A-G intron -    22484847
chr7:107239315(+) A-G intron -    22484847
chr7:107247712(+) A-G intron -    22484847
chr7:107248146(+) A-G intron -    22484847
chr7:107257245(+) A-G intron -    22484847
chr7:107257247(+) A-G intron -    22484847
chr7:107257253(+) A-G intron -    22484847
chr7:107257323(+) A-G intron -    22484847
chr7:107257326(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BCAP29
chr7:107220487-107220488(+) m1A 5'UTR       26863196
chr7:107236356-107236357(+) m6A 3'UTR//CDS//exon       24981863//27773535
chr7:107236364-107236365(+) m6A 3'UTR//CDS//exon       24981863//27773535
chr7:107236381-107236382(+) m6A 3'UTR//CDS//exon       24981863//27773535
chr7:107236437-107236438(+) m6A 3'UTR//CDS//exon       24981863//27773535
chr7:107240705-107240706(+) m6A CDS//intron       24981863//27773535
chr7:107240725-107240726(+) m6A 3'UTR//intron       24981863//27773535
chr7:107240743-107240744(+) m6A 3'UTR//intron       24981863//27773535
chr7:107240897-107240898(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr7:107240908-107240909(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr7:107240918-107240919(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr7:107240925-107240926(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr7:107240940-107240941(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr7:107253828-107253829(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr7:107253861-107253862(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr7:107253870-107253871(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085
chr7:107254157-107254158(+) m6A CDS//intron       24981863//27773535//22608085
chr7:107258801-107258802(+) m6A CDS//exon//intron       24981863
chr7:107258808-107258809(+) m6A 3'UTR//CDS//exon//intron       24981863
chr7:107258820-107258821(+) m6A 3'UTR//CDS//exon//intron       24981863
chr7:107260052-107260053(+) m6A 3'UTR//intron       24981863
chr7:107260067-107260068(+) m6A 3'UTR//intron       24981863
chr7:107260098-107260099(+) m6A 3'UTR//intron       24981863
chr7:107260157-107260158(+) m6A 3'UTR//intron       24981863
chr7:107260185-107260186(+) m6A 3'UTR//intron       24981863
chr7:107262198-107262199(+) m6A 3'UTR//CDS//intron       24284625//25456834//24981863//27773535//22608085
chr7:107262256-107262257(+) m6A 3'UTR//CDS//intron       24284625//25456834//24981863//27773535//22608085
chr7:107262267-107262268(+) m6A 3'UTR//CDS//intron       24284625//25456834//24981863//27773535//22608085
chr7:107262284-107262285(+) m6A 3'UTR//CDS//intron       24284625//25456834//24981863//27773535//22608085
chr7:107262373-107262374(+) m6A 3'UTR//CDS//intron       24981863//22608085
chr7:107262665-107262666(+) m6A 3'UTR//intron       24981863
chr7:107262671-107262672(+) m6A 3'UTR//intron       24981863
chr7:107262680-107262681(+) m6A 3'UTR//intron       24981863//22608085
chr7:107262775-107262776(+) m6A 3'UTR//intron       24981863
chr7:107262784-107262785(+) m6A 3'UTR//intron       24981863
chr7:107269474-107269475(+) m6A 3'UTR       24284625//22608085
chr7:107269584-107269585(+) m6A 3'UTR       24284625//24981863//22608085
chr7:107269602-107269603(+) m6A 3'UTR       24284625//24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-16-2-3p
Exosome Jurkat-derived T cell line (J77cl20)     21505438
Exosome Plasma     23663360
Exosome Blood|Chronic lymphocytic leukemia cells|Tongue tissue     -
Microvesicle Serum     24797360
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
BCAP29
Chromatin K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-16-2-3p
Interactor2: BCAP29

Evidence Support:


Weak-Evidence Small RNA sequencing
Prediction-Evidence miRNet
Support Database ViRBase

References:


PMID 33045840 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line PBMC cells Interactor2 expression Upregulation
Description FIG. 2.(A) Downregulated miRNAs with their predicted upregulated gene targets.

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