Detail Information

Basic Information:


  VIRBase ID:  

HHID00096224

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1273g-3p DDHD1
miRBase
Accession/Entrez ID		 hsa-miR-1273g-3p 80821
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - iPLA1alpha//PA-PLA1//PAPLA1//SPG28

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DDHD1
chr14:53516826(-) A-I      intronic
chr14:53516830(-) A-I      intronic
chr14:53517244(-) A-I      intronic
chr14:53517227(-) A-I      intronic
chr14:53517210(-) A-I      intronic
chr14:53517274(-) A-I      intronic
chr14:53517228(-) A-I      intronic
chr14:53517201(-) A-I      intronic
chr14:53516857(-) A-I      intronic
chr14:53516856(-) A-I      intronic
chr14:53517262(-) A-I      intronic
chr14:53517243(-) A-I      intronic
chr14:53516844(-) A-I      intronic
chr14:53516834(-) A-I      intronic
chr14:53579838(-) A-I      intronic
chr14:53589993(-) A-I      intronic
chr14:53533107(-) A-I      intronic
chr14:53533049(-) A-I      intronic
chr14:53526499(-) A-I      intronic
chr14:53612105(-) A-I      intronic
chr14:53526470(-) A-I      intronic
chr14:53526402(-) A-I      intronic
chr14:53535168(-) A-I      intronic
chr14:53547547(-) A-I      intronic
chr14:53590098(-) A-I      intronic
chr14:53593259(-) A-I      intronic
chr14:53612139(-) A-I      intronic
chr14:53590099(-) A-I      intronic
chr14:53590059(-) A-I      intronic
chr14:53590141(-) A-I      intronic
chr14:53592558(-) A-I      intronic
chr14:53526101(-) A-I      intronic
chr14:53592670(-) A-I      intronic
chr14:53526091(-) A-I      intronic
chr14:53526087(-) A-I      intronic
chr14:53606398(-) A-I      intronic
chr14:53604878(-) A-I      intronic
chr14:53534352(-) A-I      intronic
chr14:53533121(-) A-I      intronic
chr14:53533034(-) A-I      intronic
chr14:53533992(-) A-I      intronic
chr14:53592503(-) A-I      intronic
chr14:53549161(-) A-I      intronic
chr14:53534261(-) A-I      intronic
chr14:53593223(-) A-I      intronic
chr14:53534073(-) A-I      intronic
chr14:53574446(-) A-I      intronic
chr14:53547564(-) A-I      intronic
chr14:53533083(-) A-I      intronic
chr14:53533086(-) A-I      intronic
chr14:53534268(-) A-I      intronic
chr14:53592692(-) A-I      intronic
chr14:53534426(-) A-I      intronic
chr14:53534313(-) A-I      intronic
chr14:53534447(-) A-I      intronic
chr14:53546979(-) A-I      intronic
chr14:53570912(-) A-I      intronic
chr14:53533537(-) A-I      intronic
chr14:53579052(-) A-I      intronic
chr14:53574336(-) A-I      intronic
chr14:53533973(-) A-I      intronic
chr14:53574343(-) A-I      intronic
chr14:53574426(-) A-I      intronic
chr14:53574427(-) A-I      intronic
chr14:53574465(-) A-I      intronic
chr14:53579053(-) A-I      intronic
chr14:53570947(-) A-I      intronic
chr14:53516813(-) A-I      intronic
chr14:53611633(-) A-I      intronic
chr14:53516818(-) A-I      intronic
chr14:53547555(-) A-I      intronic
chr14:53517231(-) A-I      intronic
chr14:53534108(-) A-I      intronic
chr14:53517259(-) A-I      intronic
chr14:53533048(-) A-I      intronic
chr14:53517242(-) A-I      intronic
chr14:53533633(-) A-I      intronic
chr14:53579884(-) A-I      intronic
chr14:53579011(-) A-I      intronic
chr14:53612145(-) A-I      intronic
chr14:53517278(-) A-I      intronic
chr14:53516795(-) A-I      intronic
chr14:53534383(-) A-I      intronic
chr14:53533052(-) A-I      intronic
chr14:53579818(-) A-I      intronic
chr14:53590705(-) A-I      intronic
chr14:53533522(-) A-I      intronic
chr14:53613004(-) A-I      intronic
chr14:53534059(-) A-I      intronic
chr14:53612134(-) A-I      intronic
chr14:53532966(-) A-I      intronic
chr14:53605141(-) A-I      intronic
chr14:53534041(-) A-I      intronic
chr14:53533116(-) A-I      intronic
chr14:53534448(-) A-I      intronic
chr14:53533030(-) A-I      intronic
chr14:53533602(-) A-I      intronic
chr14:53570940(-) A-I      intronic
chr14:53534441(-) A-I      intronic
chr14:53579091(-) A-I      intronic
chr14:53534340(-) A-I      intronic
chr14:53516561(-) A-I      intronic
chr14:53534357(-) A-I      intronic
chr14:53590793(-) A-I      intronic
chr14:53613212(-) A-I      intronic
chr14:53517229(-) A-I      intronic
chr14:53577459(-) A-I      intronic
chr14:53533519(-) A-I      intronic
chr14:53533585(-) A-I      intronic
chr14:53533949(-) A-I      intronic
chr14:53535175(-) A-I      intronic
chr14:53533467(-) A-I      intronic
chr14:53517200(-) A-I      intronic
chr14:53516855(-) A-I      intronic
chr14:53517272(-) A-I      intronic
chr14:53549579(-) A-I      intronic
chr14:53534065(-) A-I      intronic
chr14:53534354(-) A-I      intronic
chr14:53579846(-) A-I      intronic
chr14:53517281(-) A-I      intronic
chr14:53533112(-) A-I      intronic
chr14:53512141(-) A-I      3'UTR
chr14:53512063(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DDHD1
chr14:53546490(-) A-I intron -    22327324
chr14:53516844(-) A-I intron -    21960545
chr14:53516795(-) A-G intron -    22484847
chr14:53516813(-) A-G intron -    22484847
chr14:53516818(-) A-G intron -    22484847
chr14:53516855(-) A-G intron -    22484847
chr14:53533585(-) A-G intron -    22484847
chr14:53534980(-) C-A intron -    22484847
chr14:53534981(-) T-A intron -    22484847
chr14:53547564(-) A-G intron -    22484847
chr14:53517231(-) A-G intron -    22484847
chr14:53517242(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DDHD1
chr14:53503540-53503541(-) m6A 3'UTR       -
chr14:53503573-53503574(-) m6A 3'UTR       -
chr14:53503626-53503627(-) m6A 3'UTR       -
chr14:53503664-53503665(-) m6A 3'UTR       -
chr14:53503670-53503671(-) m6A 3'UTR       -
chr14:53503679-53503680(-) m6A 3'UTR       -
chr14:53503686-53503687(-) m6A 3'UTR       -
chr14:53503752-53503753(-) m6A 3'UTR       -
chr14:53503759-53503760(-) m6A 3'UTR       -
chr14:53503827-53503828(-) m6A 3'UTR       -
chr14:53503886-53503887(-) m6A 3'UTR       -
chr14:53504103-53504104(-) m6A 3'UTR       -
chr14:53504191-53504192(-) m6A 3'UTR       -
chr14:53504257-53504258(-) m6A 3'UTR       -
chr14:53504278-53504279(-) m6A 3'UTR       -
chr14:53504284-53504285(-) m6A 3'UTR       -
chr14:53504311-53504312(-) m6A 3'UTR       -
chr14:53504327-53504328(-) m6A 3'UTR       -
chr14:53504365-53504366(-) m6A 3'UTR       -
chr14:53504370-53504371(-) m6A 3'UTR       -
chr14:53504406-53504407(-) m6A 3'UTR       -
chr14:53504424-53504425(-) m6A 3'UTR       -
chr14:53504454-53504455(-) m6A 3'UTR       -
chr14:53504474-53504475(-) m6A 3'UTR       -
chr14:53504510-53504511(-) m6A 3'UTR       -
chr14:53504550-53504551(-) m6A 3'UTR       -
chr14:53504572-53504573(-) m6A 3'UTR       -
chr14:53504579-53504580(-) m6A 3'UTR       -
chr14:53510171-53510172(-) m6A 3'UTR       -
chr14:53510249-53510250(-) m6A 3'UTR       -
chr14:53510332-53510333(-) m6A 3'UTR       -
chr14:53510338-53510339(-) m6A 3'UTR       -
chr14:53511857-53511858(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr14:53511950-53511951(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr14:53511966-53511967(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr14:53512116-53512117(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr14:53512134-53512135(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr14:53512157-53512158(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr14:53512294-53512295(-) m6A 3'UTR       24981863
chr14:53512757-53512758(-) m6A 3'UTR//exon       27773535
chr14:53512788-53512789(-) m6A 3'UTR//exon       27773535
chr14:53512822-53512823(-) m6A 3'UTR//exon       27773535
chr14:53512838-53512839(-) m6A 3'UTR//exon       27773535
chr14:53512864-53512865(-) m6A 3'UTR//exon       27773535
chr14:53512877-53512878(-) m6A 3'UTR//exon       27773535
chr14:53512904-53512905(-) m6A 3'UTR//exon       27773535
chr14:53512956-53512957(-) m6A 3'UTR//exon       27773535
chr14:53512967-53512968(-) m6A 3'UTR//exon       27773535
chr14:53512980-53512981(-) m6A 3'UTR//exon       27773535
chr14:53513155-53513156(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr14:53513214-53513215(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr14:53513241-53513242(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr14:53513265-53513266(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr14:53513455-53513456(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr14:53513471-53513472(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr14:53513484-53513485(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr14:53513506-53513507(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr14:53513530-53513531(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr14:53513638-53513639(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr14:53515273-53515274(-) m6A exon//intron       24284625//24981863//22608085
chr14:53522498-53522499(-) m6A CDS//exon       24284625//27773535
chr14:53522534-53522535(-) m6A CDS//exon       24284625//27773535
chr14:53522600-53522601(-) m6A CDS//exon       27773535
chr14:53522615-53522616(-) m6A CDS//exon       27773535
chr14:53525258-53525259(-) m6A CDS//exon       27773535
chr14:53529680-53529681(-) m6A CDS//exon       24981863//27773535
chr14:53529755-53529756(-) m6A CDS//exon       27773535
chr14:53570479-53570480(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr14:53570545-53570546(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr14:53616533-53616534(-) m6A 5'UTR//intron       24284625//24981863//27773535//22608085
chr14:53618980-53618981(-) m6A CDS//exon       22608085
chr14:53619058-53619059(-) m6A CDS//exon//intron       24284625//27371828
chr14:53619121-53619122(-) m6A CDS//intron       24284625//27371828//27773536
chr14:53619190-53619191(-) m6A CDS//intron       24284625//27371828//27773536//22575960
chr14:53619218-53619219(-) m6A CDS//intron       24284625//27371828//27773536//22575960
chr14:53619230-53619231(-) m6A CDS//intron       24284625//27371828//27773536//22575960
chr14:53619284-53619285(-) m6A CDS//intron       24284625//27371828//27773536
chr14:53619292-53619293(-) m6A CDS//intron       24284625//27371828//27773536
chr14:53619430-53619431(-) m6A CDS       24284625//27371828//27773536
chr14:53619553-53619554(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr14:53619574-53619575(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr14:53619630-53619631(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr14:53619673-53619674(-) m6A CDS       24209618//24981863//27371828//27773536//22608085
chr14:53619838-53619839(-) m6A 5'UTR       24981863//27371828
chr14:53619912-53619913(-) m6A 5'UTR       24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate DDHD1
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1273g-3p
Interactor2: DDHD1

Evidence Support:


Weak-Evidence Small RNA sequencing
Prediction-Evidence miRNet
Support Database ViRBase

References:


PMID 33045840 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line PBMC cells Interactor2 expression Upregulation
Description FIG. 2.(A) Downregulated miRNAs with their predicted upregulated gene targets.

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