Detail Information

Basic Information:


  VIRBase ID:  

HHID00096220

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1273g-3p PCBP3
miRBase
Accession/Entrez ID		 hsa-miR-1273g-3p 54039
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ALPHA-CP3//PCBP3-OT1//PCBP3OT

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PCBP3
chr21:47275992(+) A-I      intronic
chr21:47275809(+) A-I      intronic
chr21:47275979(+) A-I      intronic
chr21:47275798(+) A-I      intronic
chr21:47298979(+) A-I      intronic
chr21:47299038(+) A-I      intronic
chr21:47298993(+) A-I      intronic
chr21:47297572(+) A-I      intronic
chr21:47298923(+) A-I      intronic
chr21:47299133(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PCBP3
chr21:47338878-47338879(+) m6A intron       -
chr21:47338909-47338910(+) m6A intron       -
chr21:47338941-47338942(+) m6A intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PCBP3
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1273g-3p
Interactor2: PCBP3

Evidence Support:


Weak-Evidence Small RNA sequencing
Prediction-Evidence miRNet
Support Database ViRBase

References:


PMID 33045840 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line PBMC cells Interactor2 expression Upregulation
Description FIG. 2.(A) Downregulated miRNAs with their predicted upregulated gene targets.

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