Detail Information

Basic Information:


  VIRBase ID:  

HHID00096218

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1273g-3p F11R
miRBase
Accession/Entrez ID		 hsa-miR-1273g-3p 50848
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CD321//JAM//JAM1//JAMA//JCAM//KAT//PAM-1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR F11R
chr1:160967876(-) A-I      3'UTR
chr1:160967781(-) A-I      3'UTR
chr1:160967888(-) A-I      3'UTR
chr1:160967909(-) A-I      3'UTR
chr1:160967867(-) A-I      3'UTR
chr1:160967866(-) A-I      3'UTR
chr1:160967865(-) A-I      3'UTR
chr1:160967853(-) A-I      3'UTR
chr1:160967825(-) A-I      3'UTR
chr1:160966314(-) A-I      3'UTR
chr1:160966304(-) A-I      3'UTR
chr1:160967879(-) A-I      3'UTR
chr1:160965485(-) A-I      3'UTR
chr1:160965480(-) A-I      3'UTR
chr1:160965473(-) A-I      3'UTR
chr1:160967969(-) A-I      3'UTR
chr1:160967963(-) A-I      3'UTR
chr1:160967792(-) A-I      3'UTR
chr1:160967788(-) A-I      3'UTR
chr1:160967786(-) A-I      3'UTR
chr1:160967803(-) A-I      3'UTR
chr1:160967756(-) A-I      3'UTR
chr1:160967758(-) A-I      3'UTR
chr1:160967754(-) A-I      3'UTR
chr1:160967873(-) A-I      3'UTR
chr1:160967875(-) A-I      3'UTR
chr1:160979537(-) A-I      intronic
chr1:160980961(-) A-I      intronic
chr1:160980573(-) A-I      intronic
chr1:160979536(-) A-I      intronic
chr1:160980572(-) A-I      intronic
chr1:160975712(-) A-I      intronic
chr1:160975560(-) A-I      intronic
chr1:160975559(-) A-I      intronic
chr1:160980571(-) A-I      intronic
chr1:160980554(-) A-I      intronic
chr1:160979701(-) A-I      intronic
chr1:160975342(-) A-I      intronic
chr1:160975341(-) A-I      intronic
chr1:160979681(-) A-I      intronic
chr1:160975336(-) A-I      intronic
chr1:160975333(-) A-I      intronic
chr1:160978096(-) A-I      intronic
chr1:160974881(-) A-I      intronic
chr1:160974759(-) A-I      intronic
chr1:160973987(-) A-I      intronic
chr1:160979615(-) A-I      intronic
chr1:160979553(-) A-I      intronic
chr1:160973859(-) A-I      intronic
chr1:160973755(-) A-I      intronic
chr1:160979541(-) A-I      intronic
chr1:160981476(-) A-I      intronic
chr1:160965285(-) A-I      3'UTR
chr1:160965299(-) A-I      3'UTR
chr1:160965300(-) A-I      3'UTR
chr1:160965330(-) A-I      3'UTR
chr1:160965338(-) A-I      3'UTR
chr1:160965344(-) A-I      3'UTR
chr1:160965350(-) A-I      3'UTR
chr1:160965362(-) A-I      3'UTR
chr1:160965376(-) A-I      3'UTR
chr1:160965394(-) A-I      3'UTR
chr1:160965407(-) A-I      3'UTR
chr1:160965418(-) A-I      3'UTR
chr1:160965433(-) A-I      3'UTR
chr1:160965455(-) A-I      3'UTR
chr1:160965460(-) A-I      3'UTR
chr1:160966292(-) A-I      3'UTR
chr1:160966313(-) A-I      3'UTR
chr1:160966437(-) A-I      3'UTR
chr1:160966444(-) A-I      3'UTR
chr1:160966534(-) A-I      3'UTR
chr1:160967835(-) A-I      3'UTR
chr1:160967847(-) A-I      3'UTR
chr1:160967885(-) A-I      3'UTR
chr1:160967904(-) A-I      3'UTR
chr1:160967936(-) A-I      3'UTR
chr1:160967944(-) A-I      3'UTR
chr1:160967952(-) A-I      3'UTR
chr1:160975906(-) A-I      intronic
chr1:160982690(-) A-I      intronic
chr1:160982505(-) A-I      intronic
chr1:160975737(-) A-I      intronic
chr1:160981409(-) A-I      intronic
chr1:160981339(-) A-I      intronic
chr1:160980994(-) A-I      intronic
chr1:160979540(-) A-I      intronic
chr1:160975725(-) A-I      intronic
chr1:160980987(-) A-I      intronic
chr1:160980919(-) A-I      intronic
chr1:160972986(-) A-I      intronic
chr1:160975694(-) A-I      intronic
chr1:160980621(-) A-I      intronic
chr1:160980999(-) A-I      intronic
chr1:160974706(-) A-I      intronic
chr1:160972877(-) A-I      intronic
chr1:160973888(-) A-I      intronic
chr1:160974721(-) A-I      intronic
chr1:160965434(-) A-I      3'UTR
chr1:160966456(-) A-I      3'UTR
chr1:160973328(-) A-I      intronic
chr1:160982487(-) A-I      intronic
chr1:160973827(-) A-I      intronic
chr1:160975845(-) A-I      intronic
chr1:160965404(-) A-I      3'UTR
chr1:160966373(-) A-I      3'UTR
chr1:160972849(-) A-I      intronic
chr1:160967918(-) A-I      3'UTR
chr1:160981356(-) A-I      intronic
chr1:160973786(-) A-I      intronic
chr1:160966408(-) A-I      3'UTR
chr1:160973495(-) A-I      intronic
chr1:160967816(-) A-I      3'UTR
chr1:160974017(-) A-I      intronic
chr1:160980750(-) A-I      intronic
chr1:160967839(-) A-I      3'UTR
chr1:160965322(-) A-I      3'UTR
chr1:160967843(-) A-I      3'UTR
chr1:160965398(-) A-I      3'UTR
chr1:160982155(-) A-I      intronic
chr1:160967896(-) A-I      3'UTR
chr1:160974758(-) A-I      intronic
chr1:160981434(-) A-I      intronic
chr1:160967860(-) A-I      3'UTR
chr1:160973683(-) A-I      intronic
chr1:160967890(-) A-I      3'UTR
chr1:160965420(-) A-I      3'UTR
chr1:160966418(-) A-I      3'UTR
chr1:160967857(-) A-I      3'UTR
chr1:160975286(-) A-I      intronic
chr1:160973622(-) A-I      intronic
chr1:160975744(-) A-I      intronic
chr1:160975160(-) A-I      intronic
chr1:160974906(-) A-I      intronic
chr1:160966421(-) A-I      3'UTR
chr1:160980652(-) A-I      intronic
chr1:160967855(-) A-I      3'UTR
chr1:160966390(-) A-I      3'UTR
chr1:160966393(-) A-I      3'UTR
chr1:160982704(-) A-I      intronic
chr1:160966473(-) A-I      3'UTR
chr1:160975340(-) A-I      intronic
chr1:160975828(-) A-I      intronic
chr1:160965379(-) A-I      3'UTR
chr1:160966376(-) A-I      3'UTR
chr1:160965287(-) A-I      3'UTR
chr1:160974903(-) A-I      intronic
chr1:160967729(-) A-I      3'UTR
chr1:160967817(-) A-I      3'UTR
chr1:160966299(-) A-I      3'UTR
chr1:160974893(-) A-I      intronic
chr1:160974734(-) A-I      intronic
chr1:160975277(-) A-I      intronic
chr1:160967854(-) A-I      3'UTR
chr1:160967935(-) A-I      3'UTR
chr1:160966344(-) A-I      3'UTR
chr1:160972941(-) A-I      intronic
chr1:160980681(-) A-I      intronic
chr1:160966301(-) A-I      3'UTR
chr1:160982139(-) A-I      intronic
chr1:160975290(-) A-I      intronic
chr1:160980905(-) A-I      intronic
chr1:160980745(-) A-I      intronic
chr1:160966297(-) A-I      3'UTR
chr1:160967938(-) A-I      3'UTR
chr1:160971811(-) A-I      intronic
chr1:160973185(-) A-I      intronic
chr1:160975338(-) A-I      intronic
chr1:160966732(-) A-I      3'UTR
chr1:160974008(-) A-I      intronic
chr1:160967891(-) A-I      3'UTR
chr1:160965503(-) A-I      3'UTR
chr1:160967833(-) A-I      3'UTR
chr1:160975273(-) A-I      intronic
chr1:160965459(-) A-I      3'UTR
chr1:160966384(-) A-I      3'UTR
chr1:160973186(-) A-I      intronic
chr1:160976698(-) A-I      intronic
chr1:160973864(-) A-I      intronic
chr1:160966351(-) A-I      3'UTR
chr1:160965314(-) A-I      3'UTR
chr1:160975167(-) A-I      intronic
chr1:160967848(-) A-I      3'UTR
chr1:160975508(-) A-I      intronic
chr1:160975806(-) A-I      intronic
chr1:160972809(-) A-I      intronic
chr1:160965325(-) A-I      3'UTR
chr1:160974187(-) A-I      intronic
chr1:160967856(-) A-I      3'UTR
chr1:160966434(-) A-I      3'UTR
chr1:160981000(-) A-I      intronic
chr1:160967899(-) A-I      3'UTR
chr1:160966352(-) A-I      3'UTR
chr1:160966353(-) A-I      3'UTR
chr1:160967851(-) A-I      3'UTR
chr1:160966447(-) A-I      3'UTR
chr1:160974177(-) A-I      intronic
chr1:160977248(-) A-I      intronic
chr1:160974899(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED F11R
chr1:160966351(-) A-I exon 3'UTR    15342557
chr1:160966352(-) A-I exon 3'UTR    15342557   //22327324
chr1:160966434(-) A-I exon 3'UTR    15342557   //21960545   //22327324
chr1:160967729(-) A-I exon 3'UTR    15342557
chr1:160967816(-) A-I exon 3'UTR    15342557   //15258596   //21960545
chr1:160967817(-) A-I exon 3'UTR    15258596   //21960545
chr1:160967833(-) A-I exon 3'UTR    15342557   //15258596   //16100382   //21960545
chr1:160967843(-) A-I exon 3'UTR    15342557
chr1:160967848(-) A-I exon 3'UTR    15342557
chr1:160967856(-) A-I exon 3'UTR    15342557   //21960545   //22327324
chr1:160967857(-) A-I exon 3'UTR    15342557   //21960545
chr1:160967860(-) A-I exon 3'UTR    15342557
chr1:160967890(-) A-I exon 3'UTR    15342557   //15258596   //21960545
chr1:160967891(-) A-I exon 3'UTR    15342557
chr1:160967899(-) A-I exon 3'UTR    15342557   //21960545
chr1:160967918(-) A-I exon 3'UTR    15342557
chr1:160967938(-) A-I exon 3'UTR    15342557
chr1:160990875(-) A-I exon 5'UTR    15342557
chr1:160966301(-) A-I exon 3'UTR    22327324
chr1:160966353(-) A-I exon 3'UTR    22327324
chr1:160965420(-) A-I exon 3'UTR    21960545
chr1:160982181(-) A-I intron -    21960545
chr1:160965379(-) A-G exon 3'UTR    21725310   //22484847
chr1:160979385(-) T-G intron -    22484847
chr1:160965287(-) A-G exon 3'UTR    22484847
chr1:160965314(-) A-G exon 3'UTR    22484847
chr1:160965325(-) A-G exon 3'UTR    22484847
chr1:160965398(-) A-G exon 3'UTR    22484847
chr1:160965404(-) A-G exon 3'UTR    22484847
chr1:160966301(-) A-G exon 3'UTR    22484847
chr1:160966344(-) A-G exon 3'UTR    22484847
chr1:160966351(-) A-G exon 3'UTR    22484847
chr1:160966352(-) A-G exon 3'UTR    22484847
chr1:160966353(-) A-G exon 3'UTR    22484847
chr1:160966373(-) A-G exon 3'UTR    22484847
chr1:160966384(-) A-G exon 3'UTR    22484847
chr1:160966393(-) A-G exon 3'UTR    22484847
chr1:160966408(-) A-G exon 3'UTR    22484847
chr1:160966418(-) A-G exon 3'UTR    22484847
chr1:160966434(-) A-G exon 3'UTR    22484847
chr1:160966473(-) A-G exon 3'UTR    22484847
chr1:160966480(-) G-A exon 3'UTR    22484847
chr1:160967816(-) A-G exon 3'UTR    22484847
chr1:160967817(-) A-G exon 3'UTR    22484847
chr1:160967833(-) A-G exon 3'UTR    22484847
chr1:160967839(-) A-G exon 3'UTR    22484847
chr1:160967843(-) A-G exon 3'UTR    22484847
chr1:160967855(-) A-G exon 3'UTR    22484847
chr1:160967856(-) A-G exon 3'UTR    22484847
chr1:160967857(-) A-G exon 3'UTR    22484847
chr1:160967890(-) A-G exon 3'UTR    22484847
chr1:160967891(-) A-G exon 3'UTR    22484847
chr1:160967896(-) A-G exon 3'UTR    22484847
chr1:160967899(-) A-G exon 3'UTR    22484847
chr1:160967938(-) A-G exon 3'UTR    22484847
chr1:160973786(-) A-G intron -    22484847
chr1:160974017(-) A-G intron -    22484847
chr1:160974177(-) A-G intron -    22484847
chr1:160974758(-) A-G intron -    22484847
chr1:160974893(-) A-G intron -    22484847
chr1:160974899(-) A-G intron -    22484847
chr1:160974903(-) A-G intron -    22484847
chr1:160974906(-) A-G intron -    22484847
chr1:160975273(-) A-G intron -    22484847
chr1:160975277(-) A-G intron -    22484847
chr1:160975286(-) A-G intron -    22484847
chr1:160975338(-) A-G intron -    22484847
chr1:160975340(-) A-G intron -    22484847
chr1:160975694(-) A-G intron -    22484847
chr1:160975744(-) A-G intron -    22484847
chr1:160980621(-) A-G intron -    22484847
chr1:160980681(-) A-G intron -    22484847
chr1:160980745(-) A-G intron -    22484847
chr1:160980750(-) A-G intron -    22484847
chr1:160980999(-) A-G intron -    22484847
chr1:160981356(-) A-G intron -    22484847
chr1:160982704(-) A-G intron -    22484847
chr1:160989382(-) A-T intron -    22484847
chr1:160989383(-) G-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase F11R
chr1:160967694-160967695(-) m6A 3'UTR       24981863
chr1:160967702-160967703(-) m6A 3'UTR       24981863
chr1:160967779-160967780(-) m6A 3'UTR       25456834
chr1:160967864-160967865(-) m6A 3'UTR       24981863//27773535
chr1:160967967-160967968(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr1:160967990-160967991(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr1:160968013-160968014(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr1:160968605-160968606(-) m6A 3'UTR       24284625//24981863//27773535
chr1:160968684-160968685(-) m6A CDS       24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate F11R
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1273g-3p
Interactor2: F11R

Evidence Support:


Weak-Evidence Small RNA sequencing
Prediction-Evidence miRNet
Support Database ViRBase

References:


PMID 33045840 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line PBMC cells Interactor2 expression Upregulation
Description FIG. 2.(A) Downregulated miRNAs with their predicted upregulated gene targets.

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