Detail Information

Basic Information:


  VIRBase ID:  

HHID00096216

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1273g-3p NAALADL1
miRBase
Accession/Entrez ID		 hsa-miR-1273g-3p 10004
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - I100//NAALADASEL

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NAALADL1
chr11:64816712(-) A-I      intronic
chr11:64816483(-) A-I      intronic
chr11:64822726(-) A-I      intronic
chr11:64822743(-) A-I      intronic
chr11:64822800(-) A-I      intronic
chr11:64817178(-) A-I      intronic
chr11:64818459(-) A-I      intronic
chr11:64818199(-) A-I      intronic
chr11:64817156(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NAALADL1
chr11:64813732-64813733(-) m6A 3'UTR//5'UTR//CDS//exon//intron       27371828
chr11:64813804-64813805(-) m6A 5'UTR//CDS//exon//intron       27371828
chr11:64815231-64815232(-) m6A 5'UTR//exon//intron       25456834//27371828
chr11:64815272-64815273(-) m6A 5'UTR//exon//intron       25456834//27371828
chr11:64815283-64815284(-) m6A 5'UTR//exon//intron       25456834//27371828
chr11:64815301-64815302(-) m6A 5'UTR//exon//intron       25456834//27371828
chr11:64815306-64815307(-) m6A 5'UTR//exon//intron       25456834//27371828
chr11:64815333-64815334(-) m6A 5'UTR//exon//intron       25456834//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NAALADL1
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1273g-3p
Interactor2: NAALADL1

Evidence Support:


Weak-Evidence Small RNA sequencing
Prediction-Evidence miRNet
Support Database ViRBase

References:


PMID 33045840 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line PBMC cells Interactor2 expression Upregulation
Description FIG. 2.(A) Downregulated miRNAs with their predicted upregulated gene targets.

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