Detail Information

Basic Information:


  VIRBase ID:  

HHID00096206

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_010304 SMIM8
miRBase
Accession/Entrez ID		 LNC_010304 57150
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - C6orf162//dJ102H19.2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SMIM8
chr6:88048672(+) A-I      intronic
chr6:88048961(+) A-I      intronic
chr6:88048677(+) A-I      intronic
chr6:88048948(+) A-I      intronic
chr6:88048717(+) A-I      intronic
chr6:88047408(+) A-I      intronic
chr6:88044285(+) A-I      intronic
chr6:88048902(+) A-I      intronic
chr6:88048965(+) A-I      intronic
chr6:88045516(+) A-I      intronic
chr6:88044283(+) A-I      intronic
chr6:88048803(+) A-I      intronic
chr6:88047414(+) A-I      intronic
chr6:88047556(+) A-I      intronic
chr6:88048698(+) A-I      intronic
chr6:88047581(+) A-I      intronic
chr6:88047620(+) A-I      intronic
chr6:88047548(+) A-I      intronic
chr6:88047585(+) A-I      intronic
chr6:88048730(+) A-I      intronic
chr6:88048824(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SMIM8
chr6:88046787-88046788(+) m6A CDS//intron       24981863
chr6:88046880-88046881(+) m6A CDS//intron       24284625//22608085
chr6:88049838-88049839(+) m6A CDS//intron       24284625//24981863//22608085
chr6:88049924-88049925(+) m6A CDS//intron       24284625//24981863//22608085
chr6:88049974-88049975(+) m6A CDS//intron       24284625//24209618//24981863//22608085
chr6:88050014-88050015(+) m6A 3'UTR//intron       24209618//24981863//22608085
chr6:88050050-88050051(+) m6A 3'UTR//intron       24981863//22608085
chr6:88050088-88050089(+) m6A 3'UTR//intron       24981863//22608085
chr6:88050126-88050127(+) m6A 3'UTR//intron       22608085
chr6:88074882-88074883(+) m6A intron       22608085
chr6:88074921-88074922(+) m6A intron       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SMIM8
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_010304
Interactor2: SMIM8

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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