Detail

Basic Information:

VIRBase ID:

HHID00096204

Virus:

Human immunodeficiency virus (HIV)

Host:

Homo sapiens

Confidence Score:

0.4752

Interaction Type:

Host-Host interaction

Interactor Information:

	Interactor1	Interactor2
Symbol	LNC_010304	RTEL1
miRBase Accession/Entrez ID	LNC_010304	51750
Organism	Homo sapiens	Homo sapiens
Category	lncRNA	mRNA
Alias	-	C20orf41//DKCA4//DKCB5//NHL//PFBMFT3//RTEL

RNA Editing:

Resource

Symbol

Editing Position

Change

Genetic Region

RADAR

RTEL1

chr20:62306422(+)	A-I	intronic
chr20:62307486(+)	A-I	intronic
chr20:62307564(+)	A-I	intronic
chr20:62306390(+)	A-I	intronic
chr20:62308077(+)	A-I	intronic
chr20:62304957(+)	A-I	intronic
chr20:62304966(+)	A-I	intronic
chr20:62306291(+)	A-I	intronic
chr20:62304626(+)	A-I	intronic
chr20:62306365(+)	A-I	intronic
chr20:62307489(+)	A-I	intronic
chr20:62307508(+)	A-I	intronic
chr20:62307524(+)	A-I	intronic
chr20:62304991(+)	A-I	intronic
chr20:62308857(+)	A-I	intronic
chr20:62306361(+)	A-I	intronic
chr20:62304489(+)	A-I	intronic
chr20:62304624(+)	A-I	intronic
chr20:62304563(+)	A-I	intronic
chr20:62304632(+)	A-I	intronic
chr20:62308199(+)	A-I	intronic
chr20:62304872(+)	A-I	intronic
chr20:62302095(+)	A-I	intronic
chr20:62306984(+)	A-I	intronic
chr20:62305986(+)	A-I	intronic
chr20:62300429(+)	A-I	intronic
chr20:62308841(+)	A-I	intronic
chr20:62306928(+)	A-I	intronic
chr20:62306890(+)	A-I	intronic
chr20:62306443(+)	A-I	intronic
chr20:62306008(+)	A-I	intronic
chr20:62308734(+)	A-I	intronic
chr20:62304815(+)	A-I	intronic
chr20:62305907(+)	A-I	intronic
chr20:62305911(+)	A-I	intronic
chr20:62308821(+)	A-I	intronic
chr20:62308887(+)	A-I	intronic
chr20:62308847(+)	A-I	intronic
chr20:62308818(+)	A-I	intronic
chr20:62302145(+)	A-I	intronic
chr20:62303336(+)	A-I	intronic
chr20:62308809(+)	A-I	intronic
chr20:62308209(+)	A-I	intronic
chr20:62305823(+)	A-I	intronic
chr20:62302059(+)	A-I	intronic
chr20:62306440(+)	A-I	intronic
chr20:62304689(+)	A-I	intronic
chr20:62307501(+)	A-I	intronic
chr20:62305835(+)	A-I	intronic
chr20:62307538(+)	A-I	intronic
chr20:62304853(+)	A-I	intronic
chr20:62308807(+)	A-I	intronic
chr20:62304891(+)	A-I	intronic
chr20:62306378(+)	A-I	intronic
chr20:62308168(+)	A-I	intronic

RNA Modification:

Resource

Symbol

ModificationPosition

Type

Genomic Context

PMID

RMBase

RTEL1

chr20:62289648-62289649(+)	m6A	5'UTR//exon	24981863
chr20:62289711-62289712(+)	m6A	5'UTR//exon	24284625//24981863
chr20:62289779-62289780(+)	m6A	5'UTR//exon	24981863
chr20:62289808-62289809(+)	m6A	5'UTR//exon	-
chr20:62292730-62292731(+)	m6A	5'UTR//CDS//exon	24284625
chr20:62292840-62292841(+)	m6A	5'UTR//CDS//exon	24284625
chr20:62293168-62293169(+)	m6A	exon//intron	-
chr20:62293214-62293215(+)	m6A	5'UTR//CDS	24284625
chr20:62293243-62293244(+)	m6A	5'UTR//CDS	24284625
chr20:62293283-62293284(+)	m6A	5'UTR//CDS	24284625
chr20:62297395-62297396(+)	m6A	5'UTR//CDS//exon	-
chr20:62297404-62297405(+)	m6A	5'UTR//CDS//exon	-
chr20:62298847-62298848(+)	m6A	5'UTR//CDS//exon	-
chr20:62303941-62303942(+)	m6A	CDS//exon	-
chr20:62305385-62305386(+)	m6A	CDS//exon	-
chr20:62305431-62305432(+)	m6A	CDS	-
chr20:62309503-62309504(+)	m6A	CDS	24284625
chr20:62309518-62309519(+)	m6A	CDS	24284625
chr20:62311244-62311245(+)	m6A	CDS	-
chr20:62312044-62312045(+)	m6A	CDS	22575960
chr20:62312061-62312062(+)	m6A	CDS	22575960
chr20:62316891-62316892(+)	m6A	CDS	22575960
chr20:62320870-62320871(+)	m6A	CDS//intron	24284625
chr20:62320879-62320880(+)	m6A	CDS//intron	24284625
chr20:62320933-62320934(+)	m6A	CDS//intron	24284625
chr20:62321151-62321152(+)	m6A	CDS	24284625
chr20:62321187-62321188(+)	m6A	CDS	24284625
chr20:62322269-62322270(+)	m6A	CDS	24284625
chr20:62323147-62323148(+)	m6A	CDS	25456834
chr20:62323229-62323230(+)	m6A	intron	-
chr20:62323494-62323495(+)	m6A	intron	-
chr20:62323569-62323570(+)	m6A	intron	-
chr20:62323617-62323618(+)	m6A	intron	-
chr20:62324107-62324108(+)	m6A	intron	22575960
chr20:62324185-62324186(+)	m6A	CDS	24284625//25456834//24981863
chr20:62324266-62324267(+)	m6A	CDS	24284625//24981863
chr20:62324329-62324330(+)	m6A	CDS	24284625//24981863
chr20:62324627-62324628(+)	m6A	CDS	24284625
chr20:62325674-62325675(+)	m6A	CDS//intron	24284625
chr20:62325781-62325782(+)	m6A	3'UTR//CDS	24284625
chr20:62325799-62325800(+)	m6A	3'UTR//CDS	-
chr20:62326096-62326097(+)	m6A	3'UTR//CDS	-
chr20:62326700-62326701(+)	m6A	3'UTR//CDS	24284625//25456834//22608085
chr20:62326709-62326710(+)	m6A	3'UTR//CDS	24284625//25456834//22608085
chr20:62326738-62326739(+)	m6A	3'UTR//CDS	24284625//25456834//24981863//22608085
chr20:62326754-62326755(+)	m6A	3'UTR//CDS	24284625//25456834//24981863//22608085
chr20:62326801-62326802(+)	m6A	3'UTR//CDS	24284625//25456834//24981863//22608085
chr20:62326851-62326852(+)	m6A	3'UTR//CDS//intron	24284625//25456834//24981863//22608085
chr20:62327563-62327564(+)	m6A	3'UTR	24284625

RNA Localization:

Resource

Symbol

Subcellular Localization

Tissue or Cell Line

PMID

RNALocate

RTEL1

Chromatin	K562 cells	-
Cytosol	HCC cell line (HepG2)\|HeLa-S3 cells\|K562 cells	-
Exosome	Blood	-
Nucleolus	K562 cells	-
Nucleus	HeLa-S3 cells\|K562 cells	-

Interaction Network (The top 100 interactions):

Interactor1: LNC_010304

Interactor2: RTEL1

Evidence Support:

Weak-Evidence	RNA-Seq
Support Database	ViRBase

References:

PMID	32341894	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	CD4 T cells	Interactor2 expression	None
Description	Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

Basic Information:

VIRBase ID:

Virus:

Host:

Confidence Score:

Interaction Type:

Interactor Information:

RNA Editing:

RNA Modification:

RNA Localization:

Interaction Network (The top 100 interactions):

Evidence Support:

References:

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