Detail Information

Basic Information:


  VIRBase ID:  

HHID00096103

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_008335 IKZF1
miRBase
Accession/Entrez ID		 LNC_008335 10320
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - CVID13//Hs.54452//IK1//IKAROS//LyF-1//LYF1//PPP1R92//PRO0758//ZNFN1A1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR IKZF1
chr7:50353888(+) A-I      intronic
chr7:50365256(+) A-I      intronic
chr7:50365275(+) A-I      intronic
chr7:50426803(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase IKZF1
chr7:50467699-50467700(+) m6A CDS//exon//intron       -
chr7:50467864-50467865(+) m6A CDS//exon       27371828
chr7:50467879-50467880(+) m6A CDS//exon       27371828
chr7:50467951-50467952(+) m6A CDS//exon       27371828
chr7:50467960-50467961(+) m6A CDS//exon       27371828
chr7:50468095-50468096(+) m6A CDS//exon       25456834//27371828
chr7:50468159-50468160(+) m6A CDS//exon       25456834
chr7:50468266-50468267(+) m6A CDS//exon       25456834
chr7:50468349-50468350(+) m6A 3'UTR       24209618//25456834//24981863//27371828
chr7:50468379-50468380(+) m6A 3'UTR       24209618//25456834//24981863//27371828
chr7:50468412-50468413(+) m6A 3'UTR       24209618//25456834//24981863
chr7:50468417-50468418(+) m6A 3'UTR       24209618//25456834//24981863
chr7:50468422-50468423(+) m6A 3'UTR       24209618//25456834//24981863
chr7:50468427-50468428(+) m6A 3'UTR       24209618//25456834//24981863
chr7:50468550-50468551(+) m6A 3'UTR       -
chr7:50468578-50468579(+) m6A 3'UTR       -
chr7:50468666-50468667(+) m6A 3'UTR       -
chr7:50470000-50470001(+) m6A 3'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate IKZF1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_008335
Interactor2: IKZF1

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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