Detail Information

Basic Information:


  VIRBase ID:  

HHID00096091

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_008227 C2orf42
miRBase
Accession/Entrez ID		 LNC_008227 54980
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C2orf42
chr2:70424462(-) A-I      intronic
chr2:70424427(-) A-I      intronic
chr2:70389694(-) A-I      intronic
chr2:70412626(-) A-I      intronic
chr2:70379141(-) A-I      intronic
chr2:70424470(-) A-I      intronic
chr2:70410426(-) A-I      intronic
chr2:70389693(-) A-I      intronic
chr2:70378386(-) A-I      intronic
chr2:70378369(-) A-I      intronic
chr2:70424443(-) A-I      intronic
chr2:70410400(-) A-I      intronic
chr2:70389537(-) A-I      intronic
chr2:70389536(-) A-I      intronic
chr2:70386887(-) A-I      intronic
chr2:70379143(-) A-I      intronic
chr2:70379136(-) A-I      intronic
chr2:70389141(-) A-I      intronic
chr2:70391200(-) A-I      intronic
chr2:70386864(-) A-I      intronic
chr2:70379087(-) A-I      intronic
chr2:70410396(-) A-I      intronic
chr2:70379103(-) A-I      intronic
chr2:70391252(-) A-I      intronic
chr2:70379112(-) A-I      intronic
chr2:70389714(-) A-I      intronic
chr2:70391209(-) A-I      intronic
chr2:70391241(-) A-I      intronic
chr2:70424440(-) A-I      intronic
chr2:70391181(-) A-I      intronic
chr2:70424431(-) A-I      intronic
chr2:70424436(-) A-I      intronic
chr2:70379076(-) A-I      intronic
chr2:70410422(-) A-I      intronic
chr2:70386676(-) A-I      intronic
chr2:70386865(-) A-I      intronic
chr2:70395584(-) A-I      intronic
chr2:70387387(-) A-I      intronic
chr2:70387426(-) A-I      intronic
chr2:70388729(-) A-I      intronic
chr2:70388738(-) A-I      intronic
chr2:70388781(-) A-I      intronic
chr2:70388790(-) A-I      intronic
chr2:70389085(-) A-I      intronic
chr2:70389114(-) A-I      intronic
chr2:70389166(-) A-I      intronic
chr2:70387380(-) A-I      intronic
chr2:70393119(-) A-I      intronic
chr2:70389317(-) A-I      intronic
chr2:70389700(-) A-I      intronic
chr2:70390137(-) A-I      intronic
chr2:70390144(-) A-I      intronic
chr2:70390227(-) A-I      intronic
chr2:70390232(-) A-I      intronic
chr2:70390237(-) A-I      intronic
chr2:70390281(-) A-I      intronic
chr2:70390558(-) A-I      intronic
chr2:70390572(-) A-I      intronic
chr2:70390578(-) A-I      intronic
chr2:70390737(-) A-I      intronic
chr2:70393134(-) A-I      intronic
chr2:70386935(-) A-I      intronic
chr2:70398324(-) A-I      intronic
chr2:70398325(-) A-I      intronic
chr2:70398326(-) A-I      intronic
chr2:70399647(-) A-I      intronic
chr2:70400183(-) A-I      intronic
chr2:70401318(-) A-I      intronic
chr2:70410415(-) A-I      intronic
chr2:70410435(-) A-I      intronic
chr2:70410448(-) A-I      intronic
chr2:70411710(-) A-I      intronic
chr2:70412651(-) A-I      intronic
chr2:70412743(-) A-I      intronic
chr2:70412757(-) A-I      intronic
chr2:70412760(-) A-I      intronic
chr2:70412788(-) A-I      intronic
chr2:70412813(-) A-I      intronic
chr2:70414459(-) A-I      intronic
chr2:70414472(-) A-I      intronic
chr2:70414479(-) A-I      intronic
chr2:70414494(-) A-I      intronic
chr2:70414934(-) A-I      intronic
chr2:70415039(-) A-I      intronic
chr2:70415050(-) A-I      intronic
chr2:70415350(-) A-I      intronic
chr2:70415382(-) A-I      intronic
chr2:70415426(-) A-I      intronic
chr2:70415431(-) A-I      intronic
chr2:70415500(-) A-I      intronic
chr2:70415595(-) A-I      intronic
chr2:70415611(-) A-I      intronic
chr2:70415617(-) A-I      intronic
chr2:70399702(-) A-I      intronic
chr2:70425340(-) A-I      intronic
chr2:70434449(-) A-I      intronic
chr2:70434518(-) A-I      intronic
chr2:70434967(-) A-I      intronic
chr2:70435826(-) A-I      intronic
chr2:70435828(-) A-I      intronic
chr2:70435842(-) A-I      intronic
chr2:70435984(-) A-I      intronic
chr2:70436404(-) A-I      intronic
chr2:70424471(-) A-I      intronic
chr2:70395621(-) A-I      intronic
chr2:70398286(-) A-I      intronic
chr2:70398321(-) A-I      intronic
chr2:70398322(-) A-I      intronic
chr2:70383022(-) A-I      intronic
chr2:70383029(-) A-I      intronic
chr2:70383225(-) A-I      intronic
chr2:70383274(-) A-I      intronic
chr2:70383488(-) A-I      intronic
chr2:70384891(-) A-I      intronic
chr2:70385103(-) A-I      intronic
chr2:70383013(-) A-I      intronic
chr2:70382264(-) A-I      intronic
chr2:70382254(-) A-I      intronic
chr2:70382219(-) A-I      intronic
chr2:70382210(-) A-I      intronic
chr2:70381964(-) A-I      intronic
chr2:70380580(-) A-I      intronic
chr2:70380567(-) A-I      intronic
chr2:70379088(-) A-I      intronic
chr2:70379065(-) A-I      intronic
chr2:70378752(-) A-I      intronic
chr2:70378705(-) A-I      intronic
chr2:70385111(-) A-I      intronic
chr2:70378010(-) A-I      intronic
chr2:70378006(-) A-I      intronic
chr2:70378002(-) A-I      intronic
chr2:70377989(-) A-I      intronic
chr2:70412838(-) A-I      intronic
chr2:70385160(-) A-I      intronic
chr2:70384885(-) A-I      intronic
chr2:70385327(-) A-I      intronic
chr2:70378381(-) A-I      intronic
chr2:70385329(-) A-I      intronic
chr2:70385674(-) A-I      intronic
chr2:70385847(-) A-I      intronic
chr2:70386475(-) A-I      intronic
chr2:70386620(-) A-I      intronic
chr2:70386642(-) A-I      intronic
chr2:70395558(-) A-I      intronic
chr2:70393725(-) A-I      intronic
chr2:70393632(-) A-I      intronic
chr2:70383622(-) A-I      intronic
chr2:70390173(-) A-I      intronic
chr2:70415572(-) A-I      intronic
chr2:70391624(-) A-I      intronic
chr2:70410405(-) A-I      intronic
chr2:70414558(-) A-I      intronic
chr2:70378704(-) A-I      intronic
chr2:70383025(-) A-I      intronic
chr2:70397477(-) A-I      intronic
chr2:70391223(-) A-I      intronic
chr2:70411777(-) A-I      intronic
chr2:70378077(-) A-I      intronic
chr2:70378056(-) A-I      intronic
chr2:70412839(-) A-I      intronic
chr2:70389088(-) A-I      intronic
chr2:70411859(-) A-I      intronic
chr2:70385168(-) A-I      intronic
chr2:70410798(-) A-I      intronic
chr2:70398767(-) A-I      intronic
chr2:70411076(-) A-I      intronic
chr2:70389535(-) A-I      intronic
chr2:70389654(-) A-I      intronic
chr2:70434831(-) A-I      intronic
chr2:70390649(-) A-I      intronic
chr2:70400495(-) A-I      intronic
chr2:70416975(-) A-I      intronic
chr2:70398915(-) A-I      intronic
chr2:70389608(-) A-I      intronic
chr2:70435873(-) A-I      intronic
chr2:70385248(-) A-I      intronic
chr2:70390072(-) A-I      intronic
chr2:70382572(-) A-I      intronic
chr2:70410517(-) A-I      intronic
chr2:70393480(-) A-I      intronic
chr2:70433906(-) A-I      intronic
chr2:70389154(-) A-I      intronic
chr2:70415549(-) A-I      intronic
chr2:70378333(-) A-I      intronic
chr2:70411816(-) A-I      intronic
chr2:70379165(-) A-I      intronic
chr2:70389095(-) A-I      intronic
chr2:70378148(-) A-I      intronic
chr2:70412588(-) A-I      intronic
chr2:70378015(-) A-I      intronic
chr2:70390096(-) A-I      intronic
chr2:70403480(-) A-I      intronic
chr2:70389356(-) A-I      intronic
chr2:70379086(-) A-I      intronic
chr2:70385746(-) A-I      intronic
chr2:70389630(-) A-I      intronic
chr2:70389576(-) A-I      intronic
chr2:70433702(-) A-I      intronic
chr2:70412585(-) A-I      intronic
chr2:70434131(-) A-I      intronic
chr2:70391240(-) A-I      intronic
chr2:70390218(-) A-I      intronic
chr2:70411201(-) A-I      intronic
chr2:70378373(-) A-I      intronic
chr2:70379923(-) A-I      intronic
chr2:70389681(-) A-I      intronic
chr2:70391323(-) A-I      intronic
chr2:70390779(-) A-I      intronic
chr2:70411892(-) A-I      intronic
chr2:70435946(-) A-I      intronic
chr2:70378227(-) A-I      intronic
chr2:70378351(-) A-I      intronic
chr2:70388743(-) A-I      intronic
chr2:70389690(-) A-I      intronic
chr2:70385076(-) A-I      intronic
chr2:70389084(-) A-I      intronic
chr2:70386469(-) A-I      intronic
chr2:70391313(-) A-I      intronic
chr2:70412783(-) A-I      intronic
chr2:70383248(-) A-I      intronic
chr2:70385658(-) A-I      intronic
chr2:70411830(-) A-I      intronic
chr2:70435102(-) A-I      intronic
chr2:70391045(-) A-I      intronic
chr2:70436334(-) A-I      intronic
chr2:70389813(-) A-I      intronic
chr2:70412613(-) A-I      intronic
chr2:70400997(-) A-I      intronic
chr2:70433354(-) A-I      intronic
chr2:70435963(-) A-I      intronic
chr2:70395377(-) A-I      intronic
chr2:70389863(-) A-I      intronic
chr2:70389730(-) A-I      intronic
chr2:70389676(-) A-I      intronic
chr2:70390882(-) A-I      intronic
chr2:70411696(-) A-I      intronic
chr2:70385639(-) A-I      intronic
chr2:70378156(-) A-I      intronic
chr2:70388850(-) A-I      intronic
chr2:70389385(-) A-I      intronic
chr2:70410730(-) A-I      intronic
chr2:70389173(-) A-I      intronic
chr2:70421467(-) A-I      intronic
chr2:70380534(-) A-I      intronic
chr2:70416455(-) A-I      intronic
chr2:70385822(-) A-I      intronic
chr2:70410732(-) A-I      intronic
chr2:70410488(-) A-I      intronic
chr2:70386554(-) A-I      intronic
chr2:70389749(-) A-I      intronic
chr2:70379948(-) A-I      intronic
chr2:70389879(-) A-I      intronic
chr2:70389282(-) A-I      intronic
chr2:70421461(-) A-I      intronic
chr2:70381930(-) A-I      intronic
chr2:70424274(-) A-I      intronic
chr2:70433745(-) A-I      intronic
chr2:70397585(-) A-I      intronic
chr2:70385209(-) A-I      intronic
chr2:70390881(-) A-I      intronic
chr2:70380043(-) A-I      intronic
chr2:70382531(-) A-I      intronic
chr2:70387410(-) A-I      intronic
chr2:70378654(-) A-I      intronic
chr2:70425429(-) A-I      intronic
chr2:70423782(-) A-I      intronic
chr2:70400570(-) A-I      intronic
chr2:70378395(-) A-I      intronic
chr2:70382290(-) A-I      intronic
chr2:70386940(-) A-I      intronic
chr2:70389732(-) A-I      intronic
chr2:70378436(-) A-I      intronic
chr2:70385760(-) A-I      intronic
chr2:70379182(-) A-I      intronic
chr2:70385255(-) A-I      intronic
chr2:70389623(-) A-I      intronic
chr2:70390938(-) A-I      intronic
chr2:70391366(-) A-I      intronic
chr2:70383590(-) A-I      intronic
chr2:70390138(-) A-I      intronic
chr2:70420669(-) A-I      intronic
chr2:70383565(-) A-I      intronic
chr2:70391340(-) A-I      intronic
chr2:70382337(-) A-I      intronic
chr2:70384474(-) A-I      intronic
chr2:70387542(-) A-I      intronic
chr2:70378225(-) A-I      intronic
chr2:70395381(-) A-I      intronic
chr2:70388889(-) A-I      intronic
chr2:70384759(-) A-I      intronic
chr2:70435800(-) A-I      intronic
chr2:70400237(-) A-I      intronic
chr2:70391677(-) A-I      intronic
chr2:70435964(-) A-I      intronic
chr2:70415501(-) A-I      intronic
chr2:70389651(-) A-I      intronic
chr2:70414534(-) A-I      intronic
chr2:70411189(-) A-I      intronic
chr2:70389325(-) A-I      intronic
chr2:70412625(-) A-I      intronic
chr2:70411886(-) A-I      intronic
chr2:70391420(-) A-I      intronic
chr2:70410710(-) A-I      intronic
chr2:70411728(-) A-I      intronic
chr2:70385710(-) A-I      intronic
chr2:70390167(-) A-I      intronic
chr2:70410446(-) A-I      intronic
chr2:70412694(-) A-I      intronic
chr2:70380053(-) A-I      intronic
chr2:70416296(-) A-I      intronic
chr2:70410535(-) A-I      intronic
chr2:70416373(-) A-I      intronic
chr2:70414675(-) A-I      intronic
chr2:70382276(-) A-I      intronic
chr2:70385617(-) A-I      intronic
chr2:70433697(-) A-I      intronic
chr2:70389415(-) A-I      intronic
chr2:70378312(-) A-I      intronic
chr2:70390128(-) A-I      intronic
chr2:70436370(-) A-I      intronic
chr2:70414627(-) A-I      intronic
chr2:70412831(-) A-I      intronic
chr2:70380082(-) A-I      intronic
chr2:70378653(-) A-I      intronic
chr2:70378058(-) A-I      intronic
chr2:70388860(-) A-I      intronic
chr2:70414919(-) A-I      intronic
chr2:70378444(-) A-I      intronic
chr2:70400538(-) A-I      intronic
chr2:70410785(-) A-I      intronic
chr2:70416456(-) A-I      intronic
chr2:70389554(-) A-I      intronic
chr2:70389112(-) A-I      intronic
chr2:70423781(-) A-I      intronic
chr2:70382300(-) A-I      intronic
chr2:70383096(-) A-I      intronic
chr2:70379091(-) A-I      intronic
chr2:70411657(-) A-I      intronic
chr2:70415578(-) A-I      intronic
chr2:70378052(-) A-I      intronic
chr2:70381942(-) A-I      intronic
chr2:70397517(-) A-I      intronic
chr2:70415564(-) A-I      intronic
chr2:70414656(-) A-I      intronic
chr2:70435097(-) A-I      intronic
chr2:70381956(-) A-I      intronic
chr2:70390725(-) A-I      intronic
chr2:70379922(-) A-I      intronic
chr2:70385720(-) A-I      intronic
chr2:70424521(-) A-I      intronic
chr2:70412276(-) A-I      intronic
chr2:70391119(-) A-I      intronic
chr2:70379908(-) A-I      intronic
chr2:70421442(-) A-I      intronic
chr2:70412680(-) A-I      intronic
chr2:70389523(-) A-I      intronic
chr2:70436378(-) A-I      intronic
chr2:70411150(-) A-I      intronic
chr2:70389322(-) A-I      intronic
chr2:70412798(-) A-I      intronic
chr2:70427204(-) A-I      intronic
chr2:70391135(-) A-I      intronic
chr2:70400173(-) A-I      intronic
chr2:70411089(-) A-I      intronic
chr2:70382267(-) A-I      intronic
chr2:70414657(-) A-I      intronic
chr2:70379181(-) A-I      intronic
chr2:70410475(-) A-I      intronic
chr2:70385271(-) A-I      intronic
chr2:70410438(-) A-I      intronic
chr2:70410673(-) A-I      intronic
chr2:70410820(-) A-I      intronic
chr2:70391134(-) A-I      intronic
chr2:70398795(-) A-I      intronic
chr2:70416986(-) A-I      intronic
chr2:70415026(-) A-I      intronic
chr2:70391278(-) A-I      intronic
chr2:70379077(-) A-I      intronic
chr2:70391678(-) A-I      intronic
chr2:70425494(-) A-I      intronic
chr2:70383224(-) A-I      intronic
chr2:70397703(-) A-I      intronic
chr2:70400460(-) A-I      intronic
chr2:70391054(-) A-I      intronic
chr2:70402085(-) A-I      intronic
chr2:70384907(-) A-I      intronic
chr2:70386888(-) A-I      intronic
chr2:70397674(-) A-I      intronic
chr2:70380041(-) A-I      intronic
chr2:70411767(-) A-I      intronic
chr2:70387350(-) A-I      intronic
chr2:70411421(-) A-I      intronic
chr2:70410726(-) A-I      intronic
chr2:70388933(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED C2orf42
chr2:70403318(-) A-I intron -    15545495
chr2:70403356(-) A-I intron -    15545495
chr2:70403480(-) A-I intron -    15545495
chr2:70378104(-) A-G intron -    22484847
chr2:70378395(-) A-G intron -    22484847
chr2:70378443(-) A-G intron -    22484847
chr2:70378704(-) A-G intron -    22484847
chr2:70381200(-) G-T intron -    22484847
chr2:70384817(-) A-G intron -    22484847
chr2:70385145(-) A-G intron -    22484847
chr2:70385255(-) A-G intron -    22484847
chr2:70385271(-) A-G intron -    22484847
chr2:70385720(-) A-G intron -    22484847
chr2:70386469(-) A-G intron -    22484847
chr2:70386637(-) A-G intron -    22484847
chr2:70389088(-) A-G intron -    22484847
chr2:70389211(-) A-G intron -    22484847
chr2:70389255(-) A-G intron -    22484847
chr2:70390218(-) A-G intron -    22484847
chr2:70390882(-) A-G intron -    22484847
chr2:70391119(-) A-G intron -    22484847
chr2:70391199(-) A-G intron -    22484847
chr2:70391340(-) A-G intron -    22484847
chr2:70398795(-) A-G intron -    22484847
chr2:70398821(-) A-G intron -    22484847
chr2:70400237(-) A-G intron -    22484847
chr2:70400250(-) A-G intron -    22484847
chr2:70410386(-) A-G intron -    22484847
chr2:70410438(-) A-G intron -    22484847
chr2:70410446(-) A-G intron -    22484847
chr2:70410475(-) A-G intron -    22484847
chr2:70410488(-) A-G intron -    22484847
chr2:70410658(-) A-G intron -    22484847
chr2:70410673(-) A-G intron -    22484847
chr2:70410710(-) A-G intron -    22484847
chr2:70410726(-) A-G intron -    22484847
chr2:70411421(-) A-G intron -    22484847
chr2:70411767(-) A-G intron -    22484847
chr2:70411830(-) A-G intron -    22484847
chr2:70411859(-) A-G intron -    22484847
chr2:70411979(-) A-G intron -    22484847
chr2:70412782(-) A-G intron -    22484847
chr2:70412783(-) A-G intron -    22484847
chr2:70412831(-) A-G intron -    22484847
chr2:70414534(-) A-G intron -    22484847
chr2:70414656(-) A-G intron -    22484847
chr2:70414673(-) A-G intron -    22484847
chr2:70414987(-) A-G intron -    22484847
chr2:70415549(-) A-G intron -    22484847
chr2:70415564(-) A-G intron -    22484847
chr2:70416373(-) A-G intron -    22484847
chr2:70416455(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C2orf42
chr2:70377480-70377481(-) m6A 3'UTR       27773535
chr2:70377520-70377521(-) m6A CDS       27773535
chr2:70377533-70377534(-) m6A CDS       27773535
chr2:70377551-70377552(-) m6A CDS       27773535
chr2:70408396-70408397(-) m6A CDS       24981863//22608085
chr2:70408435-70408436(-) m6A CDS       24981863//22608085
chr2:70408557-70408558(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr2:70408592-70408593(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr2:70408619-70408620(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr2:70408624-70408625(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr2:70408695-70408696(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr2:70408725-70408726(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr2:70408816-70408817(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:70408828-70408829(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:70408875-70408876(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:70408972-70408973(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr2:70408981-70408982(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr2:70408986-70408987(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr2:70409000-70409001(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr2:70409008-70409009(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr2:70409095-70409096(-) m6A CDS//exon       24284625//24981863//22608085
chr2:70409111-70409112(-) m6A CDS//exon       24284625//24981863//22608085
chr2:70410021-70410022(-) m6A 5'UTR//exon//intron       24284625
chr2:70417350-70417351(-) m6A 5'UTR//intron       24284625
chr2:70418024-70418025(-) m6A 5'UTR//exon//intron       24981863
chr2:70439843-70439844(-) m6A intron       24981863//28052920//26404942
chr2:70439858-70439859(-) m6A intron       24981863//28052920//26404942
chr2:70463229-70463230(-) m6A intron       22575960
chr2:70475540-70475541(-) m6A exon       27773535//27371828//22608085
chr2:70475592-70475593(-) m6A exon       24284625//24981863//27773535//27371828//22608085
chr2:70475657-70475658(-) m6A exon       24284625//24981863//27773535//27371828//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate C2orf42
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_008227
Interactor2: C2orf42

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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