Detail Information

Basic Information:


  VIRBase ID:  

HHID00096078

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_008162 RIC3
miRBase
Accession/Entrez ID		 LNC_008162 79608
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - AYST720//PRO1385

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RIC3
chr11:8153203(-) A-I      intronic
chr11:8158749(-) A-I      intronic
chr11:8158753(-) A-I      intronic
chr11:8134001(-) A-I      intronic
chr11:8169413(-) A-I      intronic
chr11:8135940(-) A-I      intronic
chr11:8150399(-) A-I      intronic
chr11:8187568(-) A-I      intronic
chr11:8181419(-) A-I      intronic
chr11:8133938(-) A-I      intronic
chr11:8134041(-) A-I      intronic
chr11:8169412(-) A-I      intronic
chr11:8135894(-) A-I      intronic
chr11:8153231(-) A-I      intronic
chr11:8134021(-) A-I      intronic
chr11:8158982(-) A-I      NonSyn:Lys->Arg
chr11:8139658(-) A-I      intronic
chr11:8184439(-) A-I      intronic
chr11:8153285(-) A-I      intronic
chr11:8150479(-) A-I      intronic
chr11:8150466(-) A-I      intronic
chr11:8181464(-) A-I      intronic
chr11:8150485(-) A-I      intronic
chr11:8150478(-) A-I      intronic
chr11:8187404(-) A-I      intronic
chr11:8153282(-) A-I      intronic
chr11:8138707(-) A-I      intronic
chr11:8153396(-) A-I      intronic
chr11:8140164(-) A-I      intronic
chr11:8153372(-) A-I      intronic
chr11:8133952(-) A-I      intronic
chr11:8184468(-) A-I      intronic
chr11:8134092(-) A-I      intronic
chr11:8150369(-) A-I      intronic
chr11:8135891(-) A-I      intronic
chr11:8138774(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RIC3
chr11:8158982(-) A-I exon CDS    19478186

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RIC3
chr11:8131528-8131529(-) m6A 3'UTR       -
chr11:8131590-8131591(-) m6A 3'UTR       -
chr11:8132241-8132242(-) m6A 3'UTR//exon       25456834//24981863
chr11:8132332-8132333(-) m6A 3'UTR//CDS//exon       25456834//24981863
chr11:8132357-8132358(-) m6A 3'UTR//CDS//exon       25456834//24981863
chr11:8132450-8132451(-) m6A 3'UTR//CDS//exon       25456834
chr11:8132589-8132590(-) m6A 3'UTR//CDS//exon       25456834//24981863
chr11:8132621-8132622(-) m6A 3'UTR//CDS//exon       25456834//24981863
chr11:8132644-8132645(-) m6A 3'UTR//CDS//exon       24981863
chr11:8132669-8132670(-) m6A 3'UTR//CDS//exon       24981863
chr11:8148213-8148214(-) m6A 3'UTR//CDS//exon//intron       24981863
chr11:8157346-8157347(-) m6A exon//intron       24981863
chr11:8157365-8157366(-) m6A exon//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RIC3
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_008162
Interactor2: RIC3

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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