Detail Information

Basic Information:


  VIRBase ID:  

HHID00096027

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_007797 SLC4A5
miRBase
Accession/Entrez ID		 LNC_007797 57835
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - NBC4//NBCe2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC4A5
chr2:74521943(-) A-I      intronic
chr2:74521937(-) A-I      intronic
chr2:74521927(-) A-I      intronic
chr2:74457085(-) A-I      intronic
chr2:74456610(-) A-I      intronic
chr2:74456602(-) A-I      intronic
chr2:74456601(-) A-I      intronic
chr2:74456553(-) A-I      intronic
chr2:74521947(-) A-I      intronic
chr2:74521936(-) A-I      intronic
chr2:74539583(-) A-I      intronic
chr2:74542804(-) A-I      intronic
chr2:74542910(-) A-I      intronic
chr2:74545689(-) A-I      intronic
chr2:74457262(-) A-I      intronic
chr2:74457240(-) A-I      intronic
chr2:74457239(-) A-I      intronic
chr2:74457077(-) A-I      intronic
chr2:74457071(-) A-I      intronic
chr2:74457066(-) A-I      intronic
chr2:74455747(-) A-I      intronic
chr2:74461522(-) A-I      intronic
chr2:74496471(-) A-I      intronic
chr2:74529742(-) A-I      intronic
chr2:74468485(-) A-I      intronic
chr2:74468514(-) A-I      intronic
chr2:74469842(-) A-I      intronic
chr2:74471811(-) A-I      intronic
chr2:74471847(-) A-I      intronic
chr2:74471863(-) A-I      intronic
chr2:74472337(-) A-I      intronic
chr2:74472338(-) A-I      intronic
chr2:74472363(-) A-I      intronic
chr2:74496470(-) A-I      intronic
chr2:74496558(-) A-I      intronic
chr2:74496559(-) A-I      intronic
chr2:74496561(-) A-I      intronic
chr2:74496563(-) A-I      intronic
chr2:74511083(-) A-I      intronic
chr2:74511086(-) A-I      intronic
chr2:74512304(-) A-I      intronic
chr2:74521923(-) A-I      intronic
chr2:74511085(-) A-I      intronic
chr2:74511226(-) A-I      intronic
chr2:74471837(-) A-I      intronic
chr2:74455635(-) A-I      intronic
chr2:74457159(-) A-I      intronic
chr2:74456437(-) A-I      intronic
chr2:74511125(-) A-I      intronic
chr2:74521839(-) A-I      intronic
chr2:74455705(-) A-I      intronic
chr2:74452466(-) A-I      intronic
chr2:74464201(-) A-I      intronic
chr2:74457101(-) A-I      intronic
chr2:74455716(-) A-I      intronic
chr2:74456515(-) A-I      intronic
chr2:74468460(-) A-I      intronic
chr2:74490400(-) A-I      intronic
chr2:74469877(-) A-I      intronic
chr2:74456498(-) A-I      intronic
chr2:74469847(-) A-I      intronic
chr2:74468547(-) A-I      intronic
chr2:74490388(-) A-I      intronic
chr2:74512324(-) A-I      intronic
chr2:74458062(-) A-I      intronic
chr2:74471824(-) A-I      intronic
chr2:74457111(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLC4A5
chr2:74512289(-) A-G intron -    22484847

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SLC4A5
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_007797
Interactor2: SLC4A5

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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