Detail Information

Basic Information:


  VIRBase ID:  

HHID00096016

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_007797 IMPDH1
miRBase
Accession/Entrez ID		 LNC_007797 3614
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - IMPD//IMPD1//IMPDH-I//LCA11//RP10//sWSS2608

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR IMPDH1
chr7:128043512(-) A-I      intronic
chr7:128043529(-) A-I      intronic
chr7:128043420(-) A-I      intronic
chr7:128032412(-) A-I      3'UTR
chr7:128032420(-) A-I      3'UTR
chr7:128032372(-) A-I      3'UTR
chr7:128032391(-) A-I      3'UTR
chr7:128032393(-) A-I      3'UTR
chr7:128032375(-) A-I      3'UTR
chr7:128032413(-) A-I      3'UTR
chr7:128043394(-) A-I      intronic
chr7:128042253(-) A-I      intronic
chr7:128042294(-) A-I      intronic
chr7:128042350(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase IMPDH1
chr7:128032451-128032452(-) m6A 3'UTR       24284625
chr7:128032509-128032510(-) m6A 3'UTR       24284625
chr7:128032871-128032872(-) m6A 3'UTR       24284625
chr7:128032909-128032910(-) m6A 3'UTR       24284625
chr7:128034374-128034375(-) m6A 3'UTR//CDS//exon       27773535
chr7:128034602-128034603(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr7:128034748-128034749(-) m6A exon//intron       27773535//27371828
chr7:128035221-128035222(-) m6A 3'UTR//CDS//exon       22575960
chr7:128035229-128035230(-) m6A 3'UTR//CDS       22575960
chr7:128038591-128038592(-) m6A 3'UTR//CDS//exon       -
chr7:128038597-128038598(-) m6A 3'UTR//CDS//exon       -
chr7:128040215-128040216(-) m6A 3'UTR//CDS//exon       -
chr7:128041105-128041106(-) m6A 3'UTR//CDS//exon       24284625
chr7:128043778-128043779(-) m6A 3'UTR//CDS//exon       24284625//22575960
chr7:128045910-128045911(-) m6A 3'UTR//CDS//exon//intron       24284625//27371828//27773536//22575960
chr7:128049526-128049527(-) m6A 5'UTR//CDS//exon//intron       27371828//27773536
chr7:128049871-128049872(-) m6A 5'UTR//CDS//exon       24981863//27371828//27773536
chr7:128050035-128050036(-) m6A 5'UTR//exon       24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate IMPDH1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: LNC_007797
Interactor2: IMPDH1

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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