Detail Information

Basic Information:


  VIRBase ID:  

HHID00096009

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_007489 ZBTB22
miRBase
Accession/Entrez ID		 LNC_007489 9278
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - BING1//fru//fruitless//ZBTB22A//ZNF297//ZNF297A

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZBTB22
chr6:33282379-33282380(-) m6A 3'UTR       24284625
chr6:33282411-33282412(-) m6A 3'UTR       24284625
chr6:33282487-33282488(-) m6A 3'UTR       24284625//27773535
chr6:33282574-33282575(-) m6A 3'UTR       24284625//24209618//27773535
chr6:33282579-33282580(-) m6A 3'UTR       24284625//24209618//27773535
chr6:33282644-33282645(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr6:33282668-33282669(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr6:33282792-33282793(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr6:33282955-33282956(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr6:33283010-33283011(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr6:33283032-33283033(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr6:33283179-33283180(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr6:33283191-33283192(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr6:33283264-33283265(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr6:33283343-33283344(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr6:33283353-33283354(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr6:33283434-33283435(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr6:33283587-33283588(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:33283676-33283677(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:33283746-33283747(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:33283808-33283809(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr6:33283844-33283845(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr6:33284258-33284259(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:33284271-33284272(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:33284374-33284375(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr6:33284391-33284392(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZBTB22
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: LNC_007489
Interactor2: ZBTB22

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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