Detail Information

Basic Information:


  VIRBase ID:  

HHID00095999

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_007030 ELP2
miRBase
Accession/Entrez ID		 LNC_007030 55250
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - MRT58//SHINC-2//STATIP1//StIP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ELP2
chr18:33746086(+) A-I      intronic
chr18:33745954(+) A-I      intronic
chr18:33745691(+) A-I      intronic
chr18:33754759(+) A-I      3'UTR
chr18:33750490(+) A-I      intronic
chr18:33746556(+) A-I      intronic
chr18:33745966(+) A-I      intronic
chr18:33745997(+) A-I      intronic
chr18:33728151(+) A-I      intronic
chr18:33728161(+) A-I      intronic
chr18:33746373(+) A-I      intronic
chr18:33746393(+) A-I      intronic
chr18:33728174(+) A-I      intronic
chr18:33746411(+) A-I      intronic
chr18:33746420(+) A-I      intronic
chr18:33746451(+) A-I      intronic
chr18:33746516(+) A-I      intronic
chr18:33746524(+) A-I      intronic
chr18:33746534(+) A-I      intronic
chr18:33732050(+) A-I      intronic
chr18:33745967(+) A-I      intronic
chr18:33752063(+) A-I      intronic
chr18:33745945(+) A-I      intronic
chr18:33745766(+) A-I      intronic
chr18:33745693(+) A-I      intronic
chr18:33746060(+) A-I      intronic
chr18:33751809(+) A-I      intronic
chr18:33728572(+) A-I      intronic
chr18:33728612(+) A-I      intronic
chr18:33728615(+) A-I      intronic
chr18:33728626(+) A-I      intronic
chr18:33728669(+) A-I      intronic
chr18:33728745(+) A-I      intronic
chr18:33728841(+) A-I      intronic
chr18:33731246(+) A-I      intronic
chr18:33731535(+) A-I      intronic
chr18:33731586(+) A-I      intronic
chr18:33731594(+) A-I      intronic
chr18:33731601(+) A-I      intronic
chr18:33735657(+) A-I      intronic
chr18:33745686(+) A-I      intronic
chr18:33752103(+) A-I      intronic
chr18:33752145(+) A-I      intronic
chr18:33716537(+) A-I      intronic
chr18:33711974(+) A-I      intronic
chr18:33712063(+) A-I      intronic
chr18:33717257(+) A-I      intronic
chr18:33751783(+) A-I      intronic
chr18:33754717(+) A-I      3'UTR
chr18:33754932(+) A-I      3'UTR
chr18:33754777(+) A-I      3'UTR
chr18:33712006(+) A-I      intronic
chr18:33746017(+) A-I      intronic
chr18:33746398(+) A-I      intronic
chr18:33731111(+) A-I      intronic
chr18:33745725(+) A-I      intronic
chr18:33745757(+) A-I      intronic
chr18:33745957(+) A-I      intronic
chr18:33749127(+) A-I      intronic
chr18:33752082(+) A-I      intronic
chr18:33745993(+) A-I      intronic
chr18:33746062(+) A-I      intronic
chr18:33745684(+) A-I      intronic
chr18:33740276(+) A-I      intronic
chr18:33750414(+) A-I      intronic
chr18:33745625(+) A-I      intronic
chr18:33746363(+) A-I      intronic
chr18:33745897(+) A-I      intronic
chr18:33732131(+) A-I      intronic
chr18:33752100(+) A-I      intronic
chr18:33728768(+) A-I      intronic
chr18:33727262(+) A-I      intronic
chr18:33745777(+) A-I      intronic
chr18:33745635(+) A-I      intronic
chr18:33726727(+) A-I      intronic
chr18:33728827(+) A-I      intronic
chr18:33747782(+) A-I      intronic
chr18:33745891(+) A-I      intronic
chr18:33727155(+) A-I      intronic
chr18:33731315(+) A-I      intronic
chr18:33745991(+) A-I      intronic
chr18:33745689(+) A-I      intronic
chr18:33728794(+) A-I      intronic
chr18:33746081(+) A-I      intronic
chr18:33746036(+) A-I      intronic
chr18:33749449(+) A-I      intronic
chr18:33751806(+) A-I      intronic
chr18:33746113(+) A-I      intronic
chr18:33749489(+) A-I      intronic
chr18:33746433(+) A-I      intronic
chr18:33721851(+) A-I      intronic
chr18:33751679(+) A-I      intronic
chr18:33749157(+) A-I      intronic
chr18:33720238(+) A-I      intronic
chr18:33754753(+) A-I      3'UTR
chr18:33754917(+) A-I      3'UTR
chr18:33732125(+) A-I      intronic
chr18:33740430(+) A-I      intronic
chr18:33746097(+) A-I      intronic
chr18:33751921(+) A-I      intronic
chr18:33754918(+) A-I      3'UTR
chr18:33754952(+) A-I      3'UTR
chr18:33731101(+) A-I      intronic
chr18:33746101(+) A-I      intronic
chr18:33754930(+) A-I      3'UTR
chr18:33746475(+) A-I      intronic
chr18:33731625(+) A-I      intronic
chr18:33731768(+) A-I      intronic
chr18:33754876(+) A-I      3'UTR
chr18:33754890(+) A-I      3'UTR
chr18:33754760(+) A-I      3'UTR
chr18:33745734(+) A-I      intronic
chr18:33754799(+) A-I      3'UTR
chr18:33732046(+) A-I      intronic
chr18:33754789(+) A-I      3'UTR
chr18:33754855(+) A-I      3'UTR
chr18:33728222(+) A-I      intronic
chr18:33754838(+) A-I      3'UTR
chr18:33728700(+) A-I      intronic
chr18:33746052(+) A-I      intronic
chr18:33732058(+) A-I      intronic
chr18:33746004(+) A-I      intronic
chr18:33710990(+) A-I      intronic
chr18:33740318(+) A-I      intronic
chr18:33746077(+) A-I      intronic
chr18:33745667(+) A-I      intronic
chr18:33746355(+) A-I      intronic
chr18:33712073(+) A-I      intronic
chr18:33750404(+) A-I      intronic
chr18:33752155(+) A-I      intronic
chr18:33739336(+) A-I      intronic
chr18:33728759(+) A-I      intronic
chr18:33752133(+) A-I      intronic
chr18:33745659(+) A-I      intronic
chr18:33731308(+) A-I      intronic
chr18:33740393(+) A-I      intronic
chr18:33745992(+) A-I      intronic
chr18:33745730(+) A-I      intronic
chr18:33745946(+) A-I      intronic
chr18:33728736(+) A-I      intronic
chr18:33745998(+) A-I      intronic
chr18:33745692(+) A-I      intronic
chr18:33745833(+) A-I      intronic
chr18:33745765(+) A-I      intronic
chr18:33711062(+) A-I      intronic
chr18:33752075(+) A-I      intronic
chr18:33728567(+) A-I      intronic
chr18:33745982(+) A-I      intronic
chr18:33714021(+) A-I      intronic
chr18:33731103(+) A-I      intronic
chr18:33745938(+) A-I      intronic
chr18:33746035(+) A-I      intronic
chr18:33731243(+) A-I      intronic
chr18:33752174(+) A-I      intronic
chr18:33746529(+) A-I      intronic
chr18:33746558(+) A-I      intronic
chr18:33745680(+) A-I      intronic
chr18:33745685(+) A-I      intronic
chr18:33740419(+) A-I      intronic
chr18:33746065(+) A-I      intronic
chr18:33746344(+) A-I      intronic
chr18:33751863(+) A-I      intronic
chr18:33752079(+) A-I      intronic
chr18:33752175(+) A-I      intronic
chr18:33746013(+) A-I      intronic
chr18:33745943(+) A-I      intronic
chr18:33728238(+) A-I      intronic
chr18:33745794(+) A-I      intronic
chr18:33751773(+) A-I      intronic
chr18:33750326(+) A-I      intronic
chr18:33728137(+) A-I      intronic
chr18:33731229(+) A-I      intronic
chr18:33731576(+) A-I      intronic
chr18:33746049(+) A-I      intronic
chr18:33746358(+) A-I      intronic
chr18:33745724(+) A-I      intronic
chr18:33751703(+) A-I      intronic
chr18:33745683(+) A-I      intronic
chr18:33746557(+) A-I      intronic
chr18:33750551(+) A-I      intronic
chr18:33746570(+) A-I      intronic
chr18:33745669(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ELP2
chr18:33745777(+) A-I intron -    22327324
chr18:33745794(+) A-I intron -    22327324
chr18:33745795(+) A-I intron -    22327324
chr18:33745939(+) A-I intron -    22327324
chr18:33746036(+) A-I intron -    22327324
chr18:33746062(+) A-I intron -    22327324
chr18:33731308(+) A-I intron -    21960545
chr18:33745573(+) A-I intron -    21960545
chr18:33712006(+) A-G intron -    22484847
chr18:33720463(+) C-T intron -    22484847
chr18:33728759(+) A-G intron -    22484847
chr18:33740276(+) A-G intron -    22484847
chr18:33745573(+) A-G intron -    22484847
chr18:33745635(+) A-G intron -    22484847
chr18:33745683(+) A-G intron -    22484847
chr18:33745692(+) A-G intron -    22484847
chr18:33745730(+) A-G intron -    22484847
chr18:33745757(+) A-G intron -    22484847
chr18:33745777(+) A-G intron -    22484847
chr18:33745794(+) A-G intron -    22484847
chr18:33745795(+) A-G intron -    22484847
chr18:33745897(+) A-G intron -    22484847
chr18:33745898(+) A-G intron -    22484847
chr18:33745938(+) A-G intron -    22484847
chr18:33745939(+) A-G intron -    22484847
chr18:33745943(+) A-G intron -    22484847
chr18:33745991(+) A-G intron -    22484847
chr18:33745998(+) A-G intron -    22484847
chr18:33746009(+) A-G intron -    22484847
chr18:33746035(+) A-G intron -    22484847
chr18:33746036(+) A-G intron -    22484847
chr18:33746045(+) A-G intron -    22484847
chr18:33746049(+) A-G intron -    22484847
chr18:33746052(+) A-G intron -    22484847
chr18:33746065(+) A-G intron -    22484847
chr18:33746076(+) A-G intron -    22484847
chr18:33746138(+) A-G intron -    22484847
chr18:33746363(+) A-G intron -    22484847
chr18:33746394(+) A-G intron -    22484847
chr18:33746398(+) A-G intron -    22484847
chr18:33746433(+) A-G intron -    22484847
chr18:33746435(+) A-G intron -    22484847
chr18:33746475(+) A-G intron -    22484847
chr18:33746529(+) A-G intron -    22484847
chr18:33746570(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ELP2
chr18:33724923-33724924(+) Y CDS//exon//intron       26075521
chr18:33751067-33751068(+) m6A 3'UTR//CDS//exon       27773535
chr18:33751097-33751098(+) m6A 3'UTR//CDS//exon       27773535
chr18:33751112-33751113(+) m6A 3'UTR//CDS//exon       27773535//22608085
chr18:33754502-33754503(+) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085
chr18:33754507-33754508(+) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085
chr18:33754607-33754608(+) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr18:33754660-33754661(+) m6A 3'UTR//exon       24284625//24981863//22608085
chr18:33755618-33755619(+) m6A 3'UTR       24981863
chr18:33755707-33755708(+) m6A 3'UTR       24981863
chr18:33755744-33755745(+) m6A 3'UTR       24981863
chr18:33757373-33757374(+) m6A 3'UTR       24981863//22608085
chr18:33757430-33757431(+) m6A 3'UTR       24981863//22608085
chr18:33757455-33757456(+) m6A 3'UTR       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ELP2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: LNC_007030
Interactor2: ELP2

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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