Detail Information

Basic Information:


  VIRBase ID:  

HHID00095960

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_006667 CD151
miRBase
Accession/Entrez ID		 LNC_006667 977
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - GP27//MER2//PETA-3//RAPH//SFA1//TSPAN24

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CD151
chr11:834181(+) A-I      intronic
chr11:834198(+) A-I      intronic
chr11:834244(+) A-I      intronic
chr11:835480(+) A-I      intronic
chr11:834144(+) A-I      intronic
chr11:835465(+) A-I      intronic
chr11:835550(+) A-I      intronic
chr11:834173(+) A-I      intronic
chr11:835488(+) A-I      intronic
chr11:835468(+) A-I      intronic
chr11:834252(+) A-I      intronic
chr11:835403(+) A-I      intronic
chr11:834238(+) A-I      intronic
chr11:835576(+) A-I      intronic
chr11:834126(+) A-I      intronic
chr11:834284(+) A-I      intronic
chr11:834265(+) A-I      intronic
chr11:834143(+) A-I      intronic
chr11:834212(+) A-I      intronic
chr11:835419(+) A-I      intronic
chr11:835464(+) A-I      intronic
chr11:834239(+) A-I      intronic
chr11:834348(+) A-I      intronic
chr11:834280(+) A-I      intronic
chr11:835478(+) A-I      intronic
chr11:834149(+) A-I      intronic
chr11:835575(+) A-I      intronic
chr11:834362(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CD151
chr11:834212(+) A-I intron -    21960545
chr11:834238(+) A-I intron -    21960545
chr11:834239(+) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CD151
chr11:833009-833010(+) m6A 5'UTR//exon       24284625//24209618//24981863
chr11:834462-834463(+) m6A exon//intron       24284625//24981863
chr11:834490-834491(+) m6A exon//intron       24284625//24981863
chr11:834641-834642(+) m6A 5'UTR//intron       24284625
chr11:836090-836091(+) m1A CDS//exon       26863196
chr11:836093-836094(+) m6A CDS//exon       24284625//24981863
chr11:837253-837254(+) m6A CDS//exon       24284625//26404942
chr11:837271-837272(+) m6A CDS//exon       24284625//26404942//22575960
chr11:837280-837281(+) m6A CDS//exon       24284625//26404942//22575960
chr11:837337-837338(+) m6A CDS//exon       24284625//26404942//22575960
chr11:837490-837491(+) m6A CDS//exon       24284625//22575960
chr11:837499-837500(+) m6A CDS//exon       24284625//22575960
chr11:837547-837548(+) m6A CDS//exon       24284625//22575960
chr11:837589-837590(+) m6A CDS//exon       24284625//22575960
chr11:837965-837966(+) m6A CDS//exon       24284625//22575960
chr11:838238-838239(+) m6A 3'UTR//exon       22575960
chr11:838306-838307(+) m6A 3'UTR//exon       22575960
chr11:838420-838421(+) m6A 3'UTR//exon//intron       24284625
chr11:838506-838507(+) m6A 3'UTR//exon//intron       24284625//22575960
chr11:838533-838534(+) m6A 3'UTR//exon//intron       24284625//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CD151
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: LNC_006667
Interactor2: CD151

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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