Detail Information

Basic Information:


  VIRBase ID:  

HHID00095886

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_005297 LMF1
miRBase
Accession/Entrez ID		 LNC_005297 64788
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - C16orf26//HMFN1876//JFP11//TMEM112//TMEM112A

RNA Editing:


Resource Symbol Editing Position
Lncediting LMF1
    chr18: 2651412
    chr18: 2651399
    chr18: 2651398
    chr18: 2651395
    chr18: 2651372
    chr18: 2651369
    chr18: 2651365
    chr18: 2651359
    chr18: 2651357
    chr18: 2651351
    chr18: 2651287
    chr18: 2651277
    chr18: 2651260
    chr18: 2651252
    chr18: 2651238
    chr18: 2651237
    chr18: 2651746
    chr18: 3357490
    chr18: 3355559
    chr18: 3355541
    chr18: 2652615
    chr18: 2652583
    chr18: 2652582
    chr18: 2651919
    chr18: 2651910
    chr18: 2651894
    chr18: 2651876
    chr18: 2651808
    chr18: 2651807
    chr18: 2651804
    chr18: 2651778
    chr18: 2651777
    chr18: 2651772
    chr18: 2651768
    chr18: 2651761
    chr18: 2651751
    chr18: 2651712
    chr18: 2651700
    chr18: 2651667
    chr18: 2651646
    chr18: 2651475
    chr18: 2651437
    chr18: 2651434
    chr18: 2651429
    chr18: 2651425
    chr18: 2651424
Resource Symbol Editing Position Change Genetic Region
RADAR LMF1
chr16:935703(-) A-I      intronic
chr16:934163(-) A-I      intronic
chr16:935692(-) A-I      intronic
chr16:934178(-) A-I      intronic
chr16:934234(-) A-I      intronic
chr16:934236(-) A-I      intronic
chr16:934240(-) A-I      intronic
chr16:934241(-) A-I      intronic
chr16:935683(-) A-I      intronic
chr16:935860(-) A-I      intronic
chr16:940117(-) A-I      intronic
chr16:935664(-) A-I      intronic
chr16:940067(-) A-I      intronic
chr16:938752(-) A-I      intronic
chr16:935712(-) A-I      intronic
chr16:938748(-) A-I      intronic
chr16:935846(-) A-I      intronic
chr16:935828(-) A-I      intronic
chr16:935738(-) A-I      intronic
chr16:935857(-) A-I      intronic
chr16:933907(-) A-I      intronic
chr16:933915(-) A-I      intronic
chr16:933956(-) A-I      intronic
chr16:1019540(-) A-I      intronic
chr16:933982(-) A-I      intronic
chr16:933989(-) A-I      intronic
chr16:934010(-) A-I      intronic
chr16:934019(-) A-I      intronic
chr16:912311(-) A-I      intronic
chr16:934089(-) A-I      intronic
chr16:934022(-) A-I      intronic
chr16:935700(-) A-I      intronic
chr16:934026(-) A-I      intronic
chr16:934027(-) A-I      intronic
chr16:934030(-) A-I      intronic
chr16:934059(-) A-I      intronic
chr16:934076(-) A-I      intronic
chr16:934096(-) A-I      intronic
chr16:934103(-) A-I      intronic
chr16:934115(-) A-I      intronic
chr16:934118(-) A-I      intronic
chr16:934121(-) A-I      intronic
chr16:934129(-) A-I      intronic
chr16:934131(-) A-I      intronic
chr16:934220(-) A-I      intronic
chr16:934143(-) A-I      intronic
chr16:934152(-) A-I      intronic
chr16:912308(-) A-I      intronic
chr16:913255(-) A-I      intronic
chr16:912312(-) A-I      intronic
chr16:912320(-) A-I      intronic
chr16:912323(-) A-I      intronic
chr16:912332(-) A-I      intronic
chr16:912357(-) A-I      intronic
chr16:912371(-) A-I      intronic
chr16:912613(-) A-I      intronic
chr16:913361(-) A-I      intronic
chr16:912637(-) A-I      intronic
chr16:912362(-) A-I      intronic
chr16:913254(-) A-I      intronic
chr16:955827(-) A-I      intronic
chr16:913256(-) A-I      intronic
chr16:912300(-) A-I      intronic
chr16:975519(-) A-I      intronic
chr16:911602(-) A-I      intronic
chr16:993314(-) A-I      intronic
chr16:911635(-) A-I      intronic
chr16:912281(-) A-I      intronic
chr16:911436(-) A-I      intronic
chr16:913279(-) A-I      intronic
chr16:912214(-) A-I      intronic
chr16:934004(-) A-I      intronic
chr16:934063(-) A-I      intronic
chr16:934048(-) A-I      intronic
chr16:934150(-) A-I      intronic
chr16:934065(-) A-I      intronic
chr16:912734(-) A-I      intronic
chr16:934035(-) A-I      intronic
chr16:934037(-) A-I      intronic
chr16:934148(-) A-I      intronic
chr16:934155(-) A-I      intronic
chr16:934078(-) A-I      intronic
chr16:934111(-) A-I      intronic
chr16:934036(-) A-I      intronic
chr16:934083(-) A-I      intronic
chr16:912275(-) A-I      intronic
chr16:934066(-) A-I      intronic
chr16:912641(-) A-I      intronic
chr16:934047(-) A-I      intronic
chr16:934136(-) A-I      intronic
chr16:934112(-) A-I      intronic
chr16:934021(-) A-I      intronic
chr16:934126(-) A-I      intronic
chr16:934098(-) A-I      intronic
chr16:934020(-) A-I      intronic
chr16:933923(-) A-I      intronic
chr16:933995(-) A-I      intronic
chr16:912858(-) A-I      intronic
chr16:933937(-) A-I      intronic
chr16:934005(-) A-I      intronic
chr16:934067(-) A-I      intronic
chr16:934140(-) A-I      intronic
chr16:934124(-) A-I      intronic
chr16:934141(-) A-I      intronic
chr16:912595(-) A-I      intronic
chr16:912854(-) A-I      intronic
chr16:955888(-) A-I      intronic
chr16:912686(-) A-I      intronic
chr16:912746(-) A-I      intronic
chr16:910387(-) A-I      intronic
chr16:915434(-) A-I      intronic
chr16:957212(-) A-I      intronic
chr16:912416(-) A-I      intronic
chr16:912601(-) A-I      intronic
chr16:912801(-) A-I      intronic
chr16:912736(-) A-I      intronic
chr16:912249(-) A-I      intronic
chr16:955868(-) A-I      intronic
chr16:912774(-) A-I      intronic
chr16:912211(-) A-I      intronic
chr16:912846(-) A-I      intronic
chr16:957129(-) A-I      intronic
chr16:911522(-) A-I      intronic
chr16:912417(-) A-I      intronic
chr16:957158(-) A-I      intronic
chr16:912870(-) A-I      intronic
chr16:955898(-) A-I      intronic
chr16:912750(-) A-I      intronic
chr16:912655(-) A-I      intronic
chr16:912282(-) A-I      intronic
chr16:912623(-) A-I      intronic
chr16:912319(-) A-I      intronic
chr16:912836(-) A-I      intronic
chr16:912758(-) A-I      intronic
chr16:912713(-) A-I      intronic
chr16:912423(-) A-I      intronic
chr16:912284(-) A-I      intronic
chr16:912248(-) A-I      intronic
chr16:933962(-) A-I      intronic
chr16:935639(-) A-I      intronic
chr16:935768(-) A-I      intronic
chr16:934086(-) A-I      intronic
chr16:934259(-) A-I      intronic
chr16:933925(-) A-I      intronic
chr16:934224(-) A-I      intronic
chr16:912432(-) A-I      intronic
chr16:934181(-) A-I      intronic
chr16:934075(-) A-I      intronic
chr16:935613(-) A-I      intronic
chr16:934147(-) A-I      intronic
chr16:935533(-) A-I      intronic
chr16:934225(-) A-I      intronic
chr16:934110(-) A-I      intronic
chr16:912819(-) A-I      intronic
chr16:933965(-) A-I      intronic
chr16:933904(-) A-I      intronic
chr16:935746(-) A-I      intronic
chr16:935672(-) A-I      intronic
chr16:935650(-) A-I      intronic
chr16:933938(-) A-I      intronic
chr16:935836(-) A-I      intronic
chr16:906601(-) A-I      intronic
chr16:935627(-) A-I      intronic
chr16:934013(-) A-I      intronic
chr16:934261(-) A-I      intronic
chr16:934045(-) A-I      intronic
chr16:934130(-) A-I      intronic
chr16:934177(-) A-I      intronic
chr16:934034(-) A-I      intronic
chr16:934146(-) A-I      intronic
chr16:935550(-) A-I      intronic
chr16:934262(-) A-I      intronic
chr16:935859(-) A-I      intronic
chr16:934232(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LMF1
chr16:933962(-) A-I intron -    22028664   //22327324
chr16:934147(-) A-I intron -    22028664   //22327324
chr16:934181(-) A-I intron -    22327324
chr16:934224(-) A-I intron -    22327324
chr16:933923(-) A-I intron -    22028664
chr16:933925(-) A-I intron -    22028664
chr16:933937(-) A-I intron -    22028664
chr16:933938(-) A-I intron -    22028664
chr16:933995(-) A-I intron -    22028664
chr16:934004(-) A-I intron -    22028664
chr16:934005(-) A-I intron -    22028664
chr16:934013(-) A-I intron -    22028664
chr16:934020(-) A-I intron -    22028664
chr16:934021(-) A-I intron -    22028664
chr16:934034(-) A-I intron -    22028664
chr16:934035(-) A-I intron -    22028664
chr16:934036(-) A-I intron -    22028664
chr16:934037(-) A-I intron -    22028664
chr16:934047(-) A-I intron -    22028664
chr16:934048(-) A-I intron -    22028664
chr16:934063(-) A-I intron -    22028664
chr16:934065(-) A-I intron -    22028664
chr16:934066(-) A-I intron -    22028664
chr16:934067(-) A-I intron -    22028664
chr16:934075(-) A-I intron -    22028664
chr16:934078(-) A-I intron -    22028664
chr16:934083(-) A-I intron -    22028664
chr16:934086(-) A-I intron -    22028664
chr16:934098(-) A-I intron -    22028664
chr16:934111(-) A-I intron -    22028664
chr16:934112(-) A-I intron -    22028664
chr16:934124(-) A-I intron -    22028664
chr16:934126(-) A-I intron -    22028664
chr16:934130(-) A-I intron -    22028664
chr16:934136(-) A-I intron -    22028664
chr16:934140(-) A-I intron -    22028664
chr16:934141(-) A-I intron -    22028664
chr16:934146(-) A-I intron -    22028664
chr16:934148(-) A-I intron -    22028664
chr16:934150(-) A-I intron -    22028664
chr16:934155(-) A-I intron -    22028664
chr16:912701(-) A-I intron -    21960545
chr16:912734(-) A-I intron -    21960545
chr16:912758(-) A-I intron -    21960545
chr16:961081(-) A-C exon CDS    21725310
chr16:933962(-) A-G intron -    22484847
chr16:933965(-) A-G intron -    22484847
chr16:934086(-) A-G intron -    22484847
chr16:934146(-) A-G intron -    22484847
chr16:934147(-) A-G intron -    22484847
chr16:934181(-) A-G intron -    22484847
chr16:934224(-) A-G intron -    22484847
chr16:934259(-) A-G intron -    22484847
chr16:935533(-) A-G intron -    22484847
chr16:935550(-) A-G intron -    22484847
chr16:912417(-) A-G intron -    22484847
chr16:912423(-) A-G intron -    22484847
chr16:913279(-) A-G intron -    22484847
chr16:955888(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LMF1
chr16:1004460-1004461(-) m6A 5'UTR//CDS//exon//intron       24981863//27773536//22608085
chr16:1004479-1004480(-) m6A 5'UTR//CDS//exon//intron       24981863//27773536//22608085
chr16:1004491-1004492(-) m6A 5'UTR//CDS//exon//intron       24981863//27773536//22608085
chr16:1004497-1004498(-) m6A 5'UTR//CDS//exon//intron       24981863//27773536//22608085
chr16:1004506-1004507(-) m6A 5'UTR//CDS//exon//intron       24981863//27773536//22608085
chr16:1004560-1004561(-) m6A 5'UTR//CDS//exon//intron       24981863//27773536//22608085
chr16:1004581-1004582(-) m6A 5'UTR//CDS//exon//intron       24981863//27773536//22608085
chr16:1004635-1004636(-) m6A 5'UTR//CDS//exon//intron       27773536//22608085
chr16:1018827-1018828(-) m6A intron       -
chr16:1018837-1018838(-) m6A intron       -
chr16:1020922-1020923(-) m6A 5'UTR//CDS//exon//intron       24981863//27371828//27773536
chr16:1025779-1025780(-) m6A intron       25456834//24981863//22608085
chr16:1025806-1025807(-) m6A intron       25456834//24981863//22608085
chr16:1025871-1025872(-) Y intron       26075521
chr16:1025877-1025878(-) m6A intron       25456834//24981863//27773535//27371828//22608085
chr16:1025955-1025956(-) m6A intron       27773535//27371828
chr16:1026061-1026062(-) m6A intron       25456834//24981863//27773535//27371828
chr16:1026107-1026108(-) m6A intron       25456834//24981863//27371828//27773536
chr16:1026150-1026151(-) m6A intron       25456834//27371828//27773536
chr16:1026261-1026262(-) m6A intron       25456834//27371828
chr16:1026302-1026303(-) m6A intron       25456834//24981863//27371828
chr16:1026309-1026310(-) m6A intron       25456834//24981863//27371828
chr16:1026350-1026351(-) m6A intron       25456834//24981863//27371828//22608085
chr16:1026358-1026359(-) m6A intron       25456834//24981863//27371828//22608085
chr16:1026453-1026454(-) m6A intron       25456834//24981863//22608085
chr16:1026512-1026513(-) m6A intron       25456834
chr16:1026568-1026569(-) m6A intron       -
chr16:1026746-1026747(-) m6A intron       25456834//27371828//22608085
chr16:1026804-1026805(-) m6A intron       25456834//27371828//22608085
chr16:1026869-1026870(-) m6A intron       25456834//27371828
chr16:1026905-1026906(-) m6A intron       25456834
chr16:1029504-1029505(-) m6A intron       -
chr16:1029566-1029567(-) m6A intron       25456834
chr16:1029592-1029593(-) m6A intron       25456834
chr16:1029605-1029606(-) m6A intron       25456834
chr16:1029718-1029719(-) m6A intron       25456834
chr16:1029757-1029758(-) m6A intron       -
chr16:1029795-1029796(-) m6A intron       -
chr16:1029875-1029876(-) m6A intron       -
chr16:1029983-1029984(-) m6A intron       -
chr16:1030245-1030246(-) m6A intron       25456834//27371828//27773536
chr16:1030276-1030277(-) m6A intron       25456834//27371828//27773536
chr16:1030557-1030558(-) m6A intron       27773536
chr16:1030589-1030590(-) m6A intron       27773536
chr16:1030758-1030759(-) m6A intron       27773536
chr16:1030778-1030779(-) m6A intron       27773536
chr16:1031105-1031106(-) m6A intron       -
chr16:1031158-1031159(-) m6A 5'UTR       24981863//27371828
chr16:1031212-1031213(-) m6A 5'UTR       27371828
chr16:903737-903738(-) m6A 3'UTR       25456834//24981863
chr16:903770-903771(-) m6A 3'UTR       25456834//24981863
chr16:903832-903833(-) m6A 3'UTR       25456834//24981863
chr16:903849-903850(-) m6A 3'UTR       25456834//24981863//27773535
chr16:904023-904024(-) m6A 3'UTR       24981863
chr16:904029-904030(-) m6A 3'UTR       24981863
chr16:904046-904047(-) m6A 3'UTR       24981863
chr16:904173-904174(-) m6A 3'UTR       25456834
chr16:904219-904220(-) m6A 3'UTR       25456834//24981863
chr16:904410-904411(-) m6A 3'UTR       25456834//24981863
chr16:904505-904506(-) m6A 3'UTR//exon       25456834//24981863//27371828
chr16:904562-904563(-) m6A 3'UTR//CDS//exon       25456834//24981863//27371828//27773536
chr16:904801-904802(-) m6A exon//intron       -
chr16:905072-905073(-) m6A exon//intron       -
chr16:905140-905141(-) m6A 3'UTR//exon//intron       27371828//27773536
chr16:905163-905164(-) m6A 3'UTR//exon//intron       27371828//27773536
chr16:905169-905170(-) m6A 3'UTR//exon//intron       27371828//27773536
chr16:905181-905182(-) m6A 3'UTR//exon//intron       27371828//27773536
chr16:905214-905215(-) m6A 3'UTR//exon//intron       27371828//27773536
chr16:905418-905419(-) m6A 3'UTR//exon//intron       27371828
chr16:905434-905435(-) m6A 3'UTR//exon//intron       27371828
chr16:905440-905441(-) m6A 3'UTR//exon//intron       27371828
chr16:905518-905519(-) m6A 3'UTR//exon//intron       27371828
chr16:905797-905798(-) m6A CDS//exon//intron       -
chr16:905914-905915(-) m6A CDS//exon//intron       25456834//27371828
chr16:905940-905941(-) m6A CDS//exon//intron       25456834
chr16:905950-905951(-) m6A CDS//intron       25456834
chr16:905989-905990(-) m6A CDS//intron       25456834
chr16:919205-919206(-) m6A exon//intron       25456834
chr16:919300-919301(-) m6A exon//intron       25456834
chr16:919319-919320(-) m6A exon//intron       25456834
chr16:919346-919347(-) m6A exon//intron       25456834
chr16:921303-921304(-) m6A 3'UTR//CDS//exon       25456834
chr16:923164-923165(-) m6A exon//intron       -
chr16:923183-923184(-) m6A exon//intron       -
chr16:923235-923236(-) m6A exon//intron       22608085
chr16:923280-923281(-) m6A exon//intron       25456834//22608085
chr16:923320-923321(-) m6A exon//intron       22608085
chr16:923390-923391(-) m6A exon//intron       22608085
chr16:923688-923689(-) m6A exon//intron       -
chr16:923723-923724(-) m6A exon//intron       -
chr16:923793-923794(-) m6A exon//intron       -
chr16:923804-923805(-) m6A exon//intron       -
chr16:937050-937051(-) m6A exon//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LMF1
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_005297
Interactor2: LMF1

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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