Detail Information

Basic Information:


  VIRBase ID:  

HHID00095827

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_004670 SLC24A4
miRBase
Accession/Entrez ID		 LNC_004670 123041
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - AI2A5//NCKX4//SHEP6//SLC24A2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC24A4
chr14:92936010(+) A-I      intronic
chr14:92936025(+) A-I      intronic
chr14:92936019(+) A-I      intronic
chr14:92936066(+) A-I      intronic
chr14:92936081(+) A-I      intronic
chr14:92936050(+) A-I      intronic
chr14:92826719(+) A-I      intronic
chr14:92912299(+) A-I      intronic
chr14:92912691(+) A-I      intronic
chr14:92869912(+) A-I      intronic
chr14:92944939(+) A-I      intronic
chr14:92912616(+) A-I      intronic
chr14:92820624(+) A-I      intronic
chr14:92860100(+) A-I      intronic
chr14:92826725(+) A-I      intronic
chr14:92826470(+) A-I      intronic
chr14:92955747(+) A-I      intronic
chr14:92876626(+) A-I      intronic
chr14:92912630(+) A-I      intronic
chr14:92912285(+) A-I      intronic
chr14:92821400(+) A-I      intronic
chr14:92955722(+) A-I      intronic
chr14:92912535(+) A-I      intronic
chr14:92912286(+) A-I      intronic
chr14:92912547(+) A-I      intronic
chr14:92876724(+) A-I      intronic
chr14:92966444(+) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC24A4
chr14:92920367-92920368(+) m6A CDS//exon       -
chr14:92920374-92920375(+) m6A CDS//exon       -
chr14:92922755-92922756(+) m6A CDS//exon       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SLC24A4
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_004670
Interactor2: SLC24A4

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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