Detail Information

Basic Information:


  VIRBase ID:  

HHID00095814

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_004559 C9orf72
miRBase
Accession/Entrez ID		 LNC_004559 203228
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - ALSFTD//DENND9//DENNL72//FTDALS//FTDALS1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C9orf72
chr9:27571592(-) A-I      intronic
chr9:27570753(-) A-I      intronic
chr9:27562659(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED C9orf72
chr9:27571488(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C9orf72
chr9:27548281-27548282(-) m6A CDS//exon       24981863//27773535//22608085
chr9:27548311-27548312(-) m6A CDS//exon       24981863//27773535//22608085
chr9:27565582-27565583(-) m6A CDS//exon       22608085
chr9:27566758-27566759(-) m6A CDS//exon       24284625//24209618//24981863//22608085
chr9:27566763-27566764(-) m6A CDS//exon       24284625//24209618//24981863//22608085
chr9:27566785-27566786(-) m6A CDS//exon       24284625//24209618//24981863//22608085
chr9:27566813-27566814(-) m6A CDS//exon       24284625//24209618//24981863//22608085
chr9:27566968-27566969(-) m6A CDS//exon       22608085
chr9:27566973-27566974(-) m6A CDS//exon       22608085
chr9:27567017-27567018(-) m6A CDS//exon       24284625//22608085
chr9:27567075-27567076(-) m6A CDS//exon       24284625//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate C9orf72
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_004559
Interactor2: C9orf72

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

Starting a new search, please wait ...