Detail Information

Basic Information:


  VIRBase ID:  

HHID00095794

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_004497 ATAT1
miRBase
Accession/Entrez ID		 LNC_004497 79969
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - alpha-TAT//alpha-TAT1//C6orf134//MEC17//Nbla00487//TAT

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ATAT1
chr6:30597439(+) A-I      intronic
chr6:30597391(+) A-I      intronic
chr6:30598229(+) A-I      intronic
chr6:30598227(+) A-I      intronic
chr6:30598203(+) A-I      intronic
chr6:30597479(+) A-I      intronic
chr6:30597090(+) A-I      intronic
chr6:30597095(+) A-I      intronic
chr6:30605395(+) A-I      intronic
chr6:30605381(+) A-I      intronic
chr6:30605380(+) A-I      intronic
chr6:30605366(+) A-I      intronic
chr6:30604813(+) A-I      intronic
chr6:30604693(+) A-I      intronic
chr6:30604668(+) A-I      intronic
chr6:30604182(+) A-I      intronic
chr6:30604181(+) A-I      intronic
chr6:30602193(+) A-I      intronic
chr6:30602189(+) A-I      intronic
chr6:30605425(+) A-I      intronic
chr6:30605861(+) A-I      intronic
chr6:30606290(+) A-I      intronic
chr6:30613092(+) A-I      intronic
chr6:30613093(+) A-I      intronic
chr6:30613176(+) A-I      intronic
chr6:30613252(+) A-I      intronic
chr6:30599929(+) A-I      intronic
chr6:30599924(+) A-I      intronic
chr6:30599923(+) A-I      intronic
chr6:30599824(+) A-I      intronic
chr6:30598660(+) A-I      intronic
chr6:30598319(+) A-I      intronic
chr6:30598266(+) A-I      intronic
chr6:30598254(+) A-I      intronic
chr6:30597503(+) A-I      intronic
chr6:30597461(+) A-I      intronic
chr6:30607682(+) A-I      intronic
chr6:30602603(+) A-I      intronic
chr6:30602602(+) A-I      intronic
chr6:30598234(+) A-I      intronic
chr6:30600199(+) A-I      intronic
chr6:30606203(+) A-I      intronic
chr6:30598539(+) A-I      intronic
chr6:30597970(+) A-I      intronic
chr6:30598333(+) A-I      intronic
chr6:30598157(+) A-I      intronic
chr6:30599391(+) A-I      intronic
chr6:30599468(+) A-I      intronic
chr6:30598595(+) A-I      intronic
chr6:30600290(+) A-I      intronic
chr6:30605415(+) A-I      intronic
chr6:30597273(+) A-I      intronic
chr6:30605839(+) A-I      intronic
chr6:30604728(+) A-I      intronic
chr6:30613097(+) A-I      intronic
chr6:30604351(+) A-I      intronic
chr6:30597121(+) A-I      intronic
chr6:30610165(+) A-I      intronic
chr6:30596562(+) A-I      intronic
chr6:30600648(+) A-I      intronic
chr6:30596819(+) A-I      intronic
chr6:30605588(+) A-I      intronic
chr6:30600460(+) A-I      intronic
chr6:30599857(+) A-I      intronic
chr6:30605340(+) A-I      intronic
chr6:30598553(+) A-I      intronic
chr6:30599397(+) A-I      intronic
chr6:30596817(+) A-I      intronic
chr6:30613265(+) A-I      intronic
chr6:30613132(+) A-I      intronic
chr6:30600281(+) A-I      intronic
chr6:30604683(+) A-I      intronic
chr6:30598654(+) A-I      intronic
chr6:30604620(+) A-I      intronic
chr6:30598563(+) A-I      intronic
chr6:30602300(+) A-I      intronic
chr6:30600334(+) A-I      intronic
chr6:30606147(+) A-I      intronic
chr6:30606757(+) A-I      intronic
chr6:30597201(+) A-I      intronic
chr6:30599313(+) A-I      intronic
chr6:30605773(+) A-I      intronic
chr6:30598325(+) A-I      intronic
chr6:30602071(+) A-I      intronic
chr6:30602078(+) A-I      intronic
chr6:30599897(+) A-I      intronic
chr6:30604780(+) A-I      intronic
chr6:30604650(+) A-I      intronic
chr6:30599962(+) A-I      intronic
chr6:30613073(+) A-I      intronic
chr6:30596778(+) A-I      intronic
chr6:30596554(+) A-I      intronic
chr6:30613119(+) A-I      intronic
chr6:30599365(+) A-I      intronic
chr6:30603206(+) A-I      intronic
chr6:30597160(+) A-I      intronic
chr6:30605655(+) A-I      intronic
chr6:30602108(+) A-I      intronic
chr6:30597951(+) A-I      intronic
chr6:30597120(+) A-I      intronic
chr6:30598077(+) A-I      intronic
chr6:30613253(+) A-I      intronic
chr6:30598237(+) A-I      intronic
chr6:30600329(+) A-I      intronic
chr6:30598554(+) A-I      intronic
chr6:30610186(+) A-I      intronic
chr6:30596827(+) A-I      intronic
chr6:30598158(+) A-I      intronic
chr6:30607729(+) A-I      intronic
chr6:30597912(+) A-I      intronic
chr6:30610264(+) A-I      intronic
chr6:30602288(+) A-I      intronic
chr6:30599476(+) A-I      intronic
chr6:30598533(+) A-I      intronic
chr6:30610187(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ATAT1
chr6:30594717-30594718(+) m6A 5'UTR//CDS//exon       24981863
chr6:30594752-30594753(+) m6A 5'UTR//CDS//exon       24981863
chr6:30595479-30595480(+) Y CDS//exon       26075521
chr6:30601564-30601565(+) m1A intron       26863196
chr6:30601571-30601572(+) m6A intron       25456834
chr6:30609991-30609992(+) m6A CDS//exon       -
chr6:30610580-30610581(+) m6A CDS//intron       -
chr6:30610643-30610644(+) m6A CDS//intron       -
chr6:30610914-30610915(+) m6A 3'UTR//intron       24981863
chr6:30610979-30610980(+) m6A 3'UTR//intron       -
chr6:30610999-30611000(+) m6A 3'UTR//intron       -
chr6:30611041-30611042(+) m6A 3'UTR//intron       -
chr6:30614385-30614386(+) m6A CDS//exon       -
chr6:30614435-30614436(+) m6A 3'UTR//exon       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ATAT1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_004497
Interactor2: ATAT1

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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