Detail Information

Basic Information:


  VIRBase ID:  

HHID00095792

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_004497 PLXNB2
miRBase
Accession/Entrez ID		 LNC_004497 23654
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - dJ402G11.3//MM1//Nbla00445//PLEXB2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PLXNB2
chr22:50737347(-) A-I      intronic
chr22:50737143(-) A-I      intronic
chr22:50737142(-) A-I      intronic
chr22:50737093(-) A-I      intronic
chr22:50734817(-) A-I      intronic
chr22:50737180(-) A-I      intronic
chr22:50737160(-) A-I      intronic
chr22:50737181(-) A-I      intronic
chr22:50737198(-) A-I      intronic
chr22:50737356(-) A-I      intronic
chr22:50737263(-) A-I      intronic
chr22:50734276(-) A-I      intronic
chr22:50737207(-) A-I      intronic
chr22:50734789(-) A-I      intronic
chr22:50737342(-) A-I      intronic
chr22:50734732(-) A-I      intronic
chr22:50737325(-) A-I      intronic
chr22:50734409(-) A-I      intronic
chr22:50737213(-) A-I      intronic
chr22:50737278(-) A-I      intronic
chr22:50734969(-) A-I      intronic
chr22:50734419(-) A-I      intronic
chr22:50734365(-) A-I      intronic
chr22:50737326(-) A-I      intronic
chr22:50737348(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PLXNB2
chr22:50713471-50713472(-) m6A 3'UTR//exon       24284625//27773535
chr22:50713489-50713490(-) m6A 3'UTR//exon       24284625//27773535
chr22:50713524-50713525(-) m6A 3'UTR//exon       24284625//27773535
chr22:50713549-50713550(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr22:50713618-50713619(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773536
chr22:50713895-50713896(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27773535//27371828//22575960
chr22:50713975-50713976(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22575960
chr22:50713992-50713993(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22575960
chr22:50714105-50714106(-) m6A 3'UTR//exon       24284625//24981863//27371828//27773536//22575960
chr22:50714151-50714152(-) m6A 3'UTR//CDS//exon       24284625//24981863
chr22:50714372-50714373(-) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//27773535//22575960
chr22:50714381-50714382(-) m6A 3'UTR//CDS//exon       24284625//24981863//26404942//27773535//22575960
chr22:50715082-50715083(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22575960
chr22:50715088-50715089(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22575960
chr22:50716063-50716064(-) m6A 3'UTR//CDS//exon       27773535//22575960
chr22:50716131-50716132(-) m6A 3'UTR//CDS//exon       27773535
chr22:50716143-50716144(-) m6A 3'UTR//CDS//exon       27773535
chr22:50716284-50716285(-) m6A CDS//exon       27773535//27773536
chr22:50716308-50716309(-) m6A CDS//exon       27773535//27773536
chr22:50716419-50716420(-) m6A CDS//exon       24284625//27773536
chr22:50716675-50716676(-) m6A CDS//exon       24284625//27371828//27773536//22575960
chr22:50716877-50716878(-) m6A CDS//exon       24284625//27371828//27773536//22575960
chr22:50716889-50716890(-) m6A CDS//exon       24284625//27773536//22575960
chr22:50716995-50716996(-) m6A exon//intron       24284625//22575960
chr22:50717073-50717074(-) Cm CDS//exon       -
chr22:50718160-50718161(-) m6A 5'UTR//CDS//exon//intron       27773535//27371828//27773536//22575960
chr22:50718492-50718493(-) m6A 5'UTR//CDS//exon//intron       27773536//22575960
chr22:50718938-50718939(-) m6A 5'UTR//CDS//exon//intron       22575960
chr22:50718992-50718993(-) m6A 5'UTR//CDS//exon//intron       22575960
chr22:50719009-50719010(-) m6A 5'UTR//CDS//exon//intron       24284625//22575960
chr22:50719079-50719080(-) m6A 5'UTR//CDS//exon//intron       24284625//27773535//22575960
chr22:50719194-50719195(-) m6A 5'UTR//CDS//exon//intron       24284625//27773535//22575960
chr22:50719257-50719258(-) m6A 5'UTR//CDS//exon//intron       24284625//27773535//27773536//22575960
chr22:50719330-50719331(-) m6A 5'UTR//CDS//exon//intron       24284625//27773535//27371828//27773536//22575960
chr22:50719338-50719339(-) m6A 5'UTR//CDS//exon//intron       24284625//27773535//27371828//27773536//22575960
chr22:50719375-50719376(-) m6A 5'UTR//CDS//exon//intron       24284625//27773535//27371828//27773536//22575960
chr22:50719380-50719381(-) m6A 5'UTR//CDS//exon//intron       24284625//27773535//27371828//27773536//22575960
chr22:50719401-50719402(-) m6A 5'UTR//CDS//exon//intron       -
chr22:50719540-50719541(-) m6A 5'UTR//CDS//exon//intron       24284625//27773535//27371828//27773536//22575960
chr22:50719945-50719946(-) m6A exon//intron       24284625//22575960
chr22:50719955-50719956(-) m6A exon//intron       24284625
chr22:50719979-50719980(-) m6A exon//intron       24284625//27773536
chr22:50720022-50720023(-) m6A 5'UTR//CDS//exon//intron       24284625//27371828//27773536
chr22:50720083-50720084(-) m6A 5'UTR//CDS//exon//intron       24284625//27371828//27773536
chr22:50720157-50720158(-) m6A 5'UTR//CDS//exon//intron       24284625//27371828//27773536
chr22:50720331-50720332(-) m6A 5'UTR//CDS//exon//intron       24284625
chr22:50720377-50720378(-) m6A 5'UTR//CDS//exon//intron       24284625
chr22:50721181-50721182(-) m6A 5'UTR//CDS//intron       24284625
chr22:50721532-50721533(-) m6A CDS//intron       24284625//22575960
chr22:50721579-50721580(-) m6A CDS//intron       24284625//27773536//22575960
chr22:50721804-50721805(-) m6A CDS//exon//intron       24284625
chr22:50722069-50722070(-) m6A CDS//exon//intron       24284625
chr22:50722099-50722100(-) m6A CDS//exon//intron       24284625//27773536
chr22:50723009-50723010(-) m6A CDS//exon//intron       24284625//27773535
chr22:50723024-50723025(-) m6A CDS//exon//intron       24284625//27773535
chr22:50723278-50723279(-) m6A CDS//intron       27773536
chr22:50723309-50723310(-) m6A CDS//intron       27773536
chr22:50724238-50724239(-) m6A CDS//exon//intron       27773536
chr22:50724244-50724245(-) m6A CDS//exon//intron       27773536
chr22:50724259-50724260(-) m6A CDS//exon//intron       27773536
chr22:50724269-50724270(-) m6A CDS//exon//intron       27773536
chr22:50724277-50724278(-) m6A CDS//exon//intron       27773536
chr22:50724303-50724304(-) m6A CDS//exon//intron       27773536
chr22:50724325-50724326(-) m6A CDS//exon//intron       27773536
chr22:50724485-50724486(-) m6A CDS//exon//intron       27773536
chr22:50724498-50724499(-) m6A CDS//exon//intron       27773536
chr22:50724607-50724608(-) m6A CDS//exon//intron       24284625
chr22:50726120-50726121(-) m6A CDS//intron       24284625//27371828//27773536
chr22:50726398-50726399(-) m6A CDS//intron       24284625//27773536
chr22:50727175-50727176(-) m6A CDS//intron       24284625
chr22:50727205-50727206(-) m6A CDS//intron       24284625
chr22:50727241-50727242(-) m6A CDS//intron       24284625
chr22:50727437-50727438(-) m6A CDS       24284625//27773536//22575960
chr22:50727467-50727468(-) m6A CDS       24284625//27773536//22575960
chr22:50728063-50728064(-) m6A CDS       24284625//25456834//24981863//27773536//22575960
chr22:50728114-50728115(-) m6A CDS       24284625//24209618//25456834//24981863//27773536//22575960
chr22:50728210-50728211(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27773536//22575960//22608085
chr22:50728225-50728226(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27773536//22575960//22608085
chr22:50728255-50728256(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr22:50728288-50728289(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr22:50728306-50728307(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr22:50728408-50728409(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr22:50728442-50728443(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr22:50728447-50728448(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr22:50728792-50728793(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085
chr22:50728909-50728910(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085
chr22:50728936-50728937(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085
chr22:50733168-50733169(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr22:50733178-50733179(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr22:50739780-50739781(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PLXNB2
Chromatin K562 cells     -
Cytosol HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_004497
Interactor2: PLXNB2

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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