Detail Information

Basic Information:


  VIRBase ID:  

HHID00095786

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_004497 SLC29A2
miRBase
Accession/Entrez ID		 LNC_004497 3177
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - DER12//ENT2//HNP36

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC29A2
chr11:66134364(-) A-I      intronic
chr11:66132542(-) A-I      intronic
chr11:66134354(-) A-I      intronic
chr11:66132649(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC29A2
chr11:66130155-66130156(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr11:66130197-66130198(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr11:66130440-66130441(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:66130453-66130454(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:66130672-66130673(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr11:66130954-66130955(-) m6A 3'UTR//CDS       24284625
chr11:66131884-66131885(-) m6A 3'UTR//CDS       24284625
chr11:66133443-66133444(-) m6A 3'UTR//CDS       24284625
chr11:66135322-66135323(-) m6A CDS       24284625//27773535
chr11:66136573-66136574(-) m6A CDS       24284625//27773535
chr11:66136586-66136587(-) m6A CDS       24284625//27773535
chr11:66138736-66138737(-) m6A CDS       24284625//27773535
chr11:66139036-66139037(-) m6A CDS       24284625//27773535
chr11:66139162-66139163(-) m6A 5'UTR//intron       24284625//24981863//27773536
chr11:66139227-66139228(-) m6A 5'UTR//intron       25456834//24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SLC29A2
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: LNC_004497
Interactor2: SLC29A2

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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