Detail Information

Basic Information:


  VIRBase ID:  

HHID00095778

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_004485 OCRL
miRBase
Accession/Entrez ID		 LNC_004485 4952
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - Dent-2//INPP5F//LOCR//NPHL2//OCRL-1//OCRL1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR OCRL
chrX:128688743(+) A-I      intronic
chrX:128688742(+) A-I      intronic
chrX:128688676(+) A-I      intronic
chrX:128685685(+) A-I      intronic
chrX:128685593(+) A-I      intronic
chrX:128705569(+) A-I      intronic
chrX:128688728(+) A-I      intronic
chrX:128685618(+) A-I      intronic
chrX:128685431(+) A-I      intronic
chrX:128688719(+) A-I      intronic
chrX:128686604(+) A-I      intronic
chrX:128685529(+) A-I      intronic
chrX:128689182(+) A-I      intronic
chrX:128685551(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase OCRL
chrX:128692621-128692622(+) Y CDS//exon       26075521
chrX:128709938-128709939(+) m6A CDS       24981863
chrX:128725333-128725334(+) m6A 3'UTR       26404942
chrX:128725378-128725379(+) m6A 3'UTR       26404942
chrX:128725391-128725392(+) m6A 3'UTR       26404942
chrX:128726342-128726343(+) Y 3'UTR       25219674//26075521

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate OCRL
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_004485
Interactor2: OCRL

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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