Detail Information

Basic Information:


  VIRBase ID:  

HHID00095747

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_004381 MCM8
miRBase
Accession/Entrez ID		 LNC_004381 84515
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - C20orf154//dJ967N21.5//POF10

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MCM8
chr20:5966641(+) A-I      NonSyn:Tyr->Cys
chr20:5949975(+) A-I      intronic
chr20:5949035(+) A-I      intronic
chr20:5949070(+) A-I      intronic
chr20:5949966(+) A-I      intronic
chr20:5950042(+) A-I      intronic
chr20:5950043(+) A-I      intronic
chr20:5969863(+) A-I      intronic
chr20:5966406(+) A-I      intronic
chr20:5964132(+) A-I      intronic
chr20:5955722(+) A-I      intronic
chr20:5957563(+) A-I      intronic
chr20:5956404(+) A-I      intronic
chr20:5956284(+) A-I      intronic
chr20:5956282(+) A-I      intronic
chr20:5956162(+) A-I      intronic
chr20:5954803(+) A-I      intronic
chr20:5954523(+) A-I      intronic
chr20:5954510(+) A-I      intronic
chr20:5941440(+) A-I      intronic
chr20:5941461(+) A-I      intronic
chr20:5954467(+) A-I      intronic
chr20:5941789(+) A-I      intronic
chr20:5944434(+) A-I      intronic
chr20:5948968(+) A-I      intronic
chr20:5954332(+) A-I      intronic
chr20:5950144(+) A-I      intronic
chr20:5950087(+) A-I      intronic
chr20:5940944(+) A-I      intronic
chr20:5949005(+) A-I      intronic
chr20:5975424(+) A-I      3'UTR
chr20:5975444(+) A-I      3'UTR
chr20:5975440(+) A-I      3'UTR
chr20:5975451(+) A-I      3'UTR
chr20:5975461(+) A-I      3'UTR
chr20:5975475(+) A-I      3'UTR
chr20:5975496(+) A-I      3'UTR
chr20:5975282(+) A-I      3'UTR
chr20:5975542(+) A-I      3'UTR
chr20:5975345(+) A-I      3'UTR
chr20:5949094(+) A-I      intronic
chr20:5949071(+) A-I      intronic
chr20:5959401(+) A-I      intronic
chr20:5948935(+) A-I      intronic
chr20:5949076(+) A-I      intronic
chr20:5949029(+) A-I      intronic
chr20:5961340(+) A-I      intronic
chr20:5975434(+) A-I      3'UTR
chr20:5975457(+) A-I      3'UTR
chr20:5975289(+) A-I      3'UTR
chr20:5975432(+) A-I      3'UTR
chr20:5975363(+) A-I      3'UTR
chr20:5975290(+) A-I      3'UTR
chr20:5941417(+) A-I      intronic
chr20:5955860(+) A-I      intronic
chr20:5956891(+) A-I      intronic
chr20:5955740(+) A-I      intronic
chr20:5950091(+) A-I      intronic
chr20:5959303(+) A-I      intronic
chr20:5956947(+) A-I      intronic
chr20:5966375(+) A-I      intronic
chr20:5959310(+) A-I      intronic
chr20:5950107(+) A-I      intronic
chr20:5969997(+) A-I      intronic
chr20:5955892(+) A-I      intronic
chr20:5961371(+) A-I      intronic
chr20:5948952(+) A-I      intronic
chr20:5969982(+) A-I      intronic
chr20:5956754(+) A-I      intronic
chr20:5949140(+) A-I      intronic
chr20:5949030(+) A-I      intronic
chr20:5955723(+) A-I      intronic
chr20:5948927(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MCM8
chr20:5951472(+) A-I intron -    22327324
chr20:5951594(+) A-I intron -    22327324
chr20:5951674(+) A-I intron -    22327324
chr20:5975434(+) A-I intron -    22327324
chr20:5948952(+) A-G intron -    22484847
chr20:5950118(+) A-G intron -    22484847
chr20:5950123(+) A-G intron -    22484847
chr20:5951555(+) A-G intron -    22484847
chr20:5951572(+) A-G intron -    22484847
chr20:5951594(+) A-G intron -    22484847
chr20:5951595(+) A-G intron -    22484847
chr20:5951596(+) A-G intron -    22484847
chr20:5951674(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MCM8
chr20:5931348-5931349(+) m6A 5'UTR       24981863//22608085
chr20:5931393-5931394(+) m6A 5'UTR       24209618//25456834//24981863//22608085
chr20:5931420-5931421(+) m6A 5'UTR       24209618//25456834//24981863//22575960//22608085
chr20:5931443-5931444(+) m6A 5'UTR       24209618//25456834//24981863//22575960//22608085
chr20:5931497-5931498(+) m6A 5'UTR       24209618//25456834//24981863//22575960//22608085
chr20:5931504-5931505(+) m6A 5'UTR       24209618//25456834//24981863//22575960//22608085
chr20:5931542-5931543(+) m6A 5'UTR       25456834//24981863//22608085
chr20:5931597-5931598(+) m6A 5'UTR       24981863
chr20:5931635-5931636(+) m6A 5'UTR       24209618//24981863//27773535
chr20:5931652-5931653(+) m6A 5'UTR       24209618//24981863//27773535
chr20:5931675-5931676(+) m6A 5'UTR//intron       24209618//24981863//27773535
chr20:5931715-5931716(+) m1A 5'UTR//intron       26863196
chr20:5932737-5932738(+) m6A CDS       24981863//27773535
chr20:5932765-5932766(+) m6A CDS       24981863//27773535
chr20:5932771-5932772(+) m6A CDS       24981863//27773535
chr20:5932787-5932788(+) m6A CDS       24981863//27773535
chr20:5933074-5933075(+) m6A CDS       27773535
chr20:5953336-5953337(+) m6A CDS//intron       -
chr20:5953357-5953358(+) m6A CDS//intron       -
chr20:5953765-5953766(+) m6A CDS//intron       -
chr20:5953786-5953787(+) m6A CDS//intron       -
chr20:5974328-5974329(+) m6A CDS       24981863//22608085
chr20:5974333-5974334(+) m6A CDS       24981863//22608085
chr20:5975028-5975029(+) m6A CDS       24284625//24981863//27773535//22608085
chr20:5975041-5975042(+) m6A 3'UTR       24284625//24981863//27773535//22608085
chr20:5975116-5975117(+) m6A 3'UTR       24284625//24981863//27773535//22608085
chr20:5975124-5975125(+) m6A 3'UTR       24284625//24981863//27773535//22608085
chr20:5975240-5975241(+) m6A 3'UTR       24981863//22608085
chr20:5975992-5975993(+) m6A 3'UTR       -
chr20:5976027-5976028(+) m6A 3'UTR       -
chr20:5976045-5976046(+) m6A 3'UTR       -
chr20:5976174-5976175(+) m6A 3'UTR       -
chr20:5976246-5976247(+) m6A 3'UTR       -
chr20:5976394-5976395(+) m6A 3'UTR       -
chr20:5976421-5976422(+) m6A 3'UTR       -
chr20:5976441-5976442(+) m6A 3'UTR       -
chr20:5976456-5976457(+) m6A 3'UTR       -
chr20:5976528-5976529(+) m6A 3'UTR       -
chr20:5976561-5976562(+) m6A 3'UTR       -
chr20:5976567-5976568(+) m6A 3'UTR       -
chr20:5976581-5976582(+) m6A 3'UTR       -
chr20:5976594-5976595(+) m6A 3'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MCM8
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: LNC_004381
Interactor2: MCM8

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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