Detail Information

Basic Information:


  VIRBase ID:  

HHID00095740

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_004381 RPS9
miRBase
Accession/Entrez ID		 LNC_004381 6203
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - S9

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RPS9
chr19:54707488(+) A-I      intronic
chr19:54706180(+) A-I      intronic
chr19:54706195(+) A-I      intronic
chr19:54706800(+) A-I      intronic
chr19:54708132(+) A-I      intronic
chr19:54708025(+) A-I      intronic
chr19:54707560(+) A-I      intronic
chr19:54707545(+) A-I      intronic
chr19:54707455(+) A-I      intronic
chr19:54707400(+) A-I      intronic
chr19:54708479(+) A-I      intronic
chr19:54708385(+) A-I      intronic
chr19:54706117(+) A-I      intronic
chr19:54706813(+) A-I      intronic
chr19:54709860(+) A-I      intronic
chr19:54709861(+) A-I      intronic
chr19:54708198(+) A-I      intronic
chr19:54709824(+) A-I      intronic
chr19:54708516(+) A-I      intronic
chr19:54707491(+) A-I      intronic
chr19:54709716(+) A-I      intronic
chr19:54707528(+) A-I      intronic
chr19:54707481(+) A-I      intronic
chr19:54707551(+) A-I      intronic
chr19:54708325(+) A-I      intronic
chr19:54707445(+) A-I      intronic
chr19:54708105(+) A-I      intronic
chr19:54708468(+) A-I      intronic
chr19:54707433(+) A-I      intronic
chr19:54709850(+) A-I      intronic
chr19:54709784(+) A-I      intronic
chr19:54709851(+) A-I      intronic
chr19:54708333(+) A-I      intronic
chr19:54709958(+) A-I      intronic
chr19:54708496(+) A-I      intronic
chr19:54709802(+) A-I      intronic
chr19:54709866(+) A-I      intronic
chr19:54705991(+) A-I      intronic
chr19:54708404(+) A-I      intronic
chr19:54707494(+) A-I      intronic
chr19:54707470(+) A-I      intronic
chr19:54706794(+) A-I      intronic
chr19:54709945(+) A-I      intronic
chr19:54706818(+) A-I      intronic
chr19:54709946(+) A-I      intronic
chr19:54707519(+) A-I      intronic
chr19:54707998(+) A-I      intronic
chr19:54707377(+) A-I      intronic
chr19:54706828(+) A-I      intronic
chr19:54707567(+) A-I      intronic
chr19:54706240(+) A-I      intronic
chr19:54706230(+) A-I      intronic
chr19:54706801(+) A-I      intronic
chr19:54707479(+) A-I      intronic
chr19:54709754(+) A-I      intronic
chr19:54708545(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RPS9
chr19:54706818(+) A-I intron -    22327324
chr19:54707445(+) A-I intron -    22327324
chr19:54707516(+) A-I intron -    22327324
chr19:54705989(+) A-I intron -    21960545
chr19:54705994(+) A-I intron -    21960545
chr19:54707993(+) A-I intron -    21960545
chr19:54705994(+) A-G intron -    22484847
chr19:54706818(+) A-G intron -    22484847
chr19:54707445(+) A-G intron -    22484847
chr19:54707470(+) A-G intron -    22484847
chr19:54707479(+) A-G intron -    22484847
chr19:54707516(+) A-G intron -    22484847
chr19:54707993(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RPS9
chr19:54704932-54704933(+) Gm intron       -
chr19:54705085-54705086(+) m6A CDS//exon       22575960
chr19:54705105-54705106(+) m6A CDS//exon       22575960
chr19:54705372-54705373(+) m6A CDS//exon       22575960
chr19:54705433-54705434(+) m6A CDS//exon       22575960
chr19:54705456-54705457(+) m6A CDS//exon       22575960
chr19:54705801-54705802(+) m6A exon//intron       -
chr19:54710256-54710257(+) m6A CDS//exon//intron       22575960
chr19:54711285-54711286(+) m6A 3'UTR//CDS//exon//intron       22575960
chr19:54711495-54711496(+) m6A 3'UTR//exon//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RPS9
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: LNC_004381
Interactor2: RPS9

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

Starting a new search, please wait ...