Detail Information

Basic Information:


  VIRBase ID:  

HHID00095709

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_004293 MRPS27
miRBase
Accession/Entrez ID		 LNC_004293 23107
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - MRP-S27//S27mt

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MRPS27
chr5:71562587(-) A-I      intronic
chr5:71575325(-) A-I      intronic
chr5:71575381(-) A-I      intronic
chr5:71612390(-) A-I      intronic
chr5:71612333(-) A-I      intronic
chr5:71612327(-) A-I      intronic
chr5:71575366(-) A-I      intronic
chr5:71613583(-) A-I      intronic
chr5:71562575(-) A-I      intronic
chr5:71607802(-) A-I      intronic
chr5:71555133(-) A-I      intronic
chr5:71584280(-) A-I      intronic
chr5:71584234(-) A-I      intronic
chr5:71612817(-) A-I      intronic
chr5:71612796(-) A-I      intronic
chr5:71612732(-) A-I      intronic
chr5:71612694(-) A-I      intronic
chr5:71612684(-) A-I      intronic
chr5:71612640(-) A-I      intronic
chr5:71584102(-) A-I      intronic
chr5:71581559(-) A-I      intronic
chr5:71612467(-) A-I      intronic
chr5:71545689(-) A-I      intronic
chr5:71612427(-) A-I      intronic
chr5:71612397(-) A-I      intronic
chr5:71581360(-) A-I      intronic
chr5:71518126(-) A-I      intronic
chr5:71584309(-) A-I      intronic
chr5:71540588(-) A-I      intronic
chr5:71553799(-) A-I      intronic
chr5:71553811(-) A-I      intronic
chr5:71555061(-) A-I      intronic
chr5:71612276(-) A-I      intronic
chr5:71545699(-) A-I      intronic
chr5:71538416(-) A-I      intronic
chr5:71607947(-) A-I      intronic
chr5:71607896(-) A-I      intronic
chr5:71607877(-) A-I      intronic
chr5:71555093(-) A-I      intronic
chr5:71555116(-) A-I      intronic
chr5:71545703(-) A-I      intronic
chr5:71545687(-) A-I      intronic
chr5:71555130(-) A-I      intronic
chr5:71581551(-) A-I      intronic
chr5:71555251(-) A-I      intronic
chr5:71538455(-) A-I      intronic
chr5:71538456(-) A-I      intronic
chr5:71557112(-) A-I      intronic
chr5:71557113(-) A-I      intronic
chr5:71557146(-) A-I      intronic
chr5:71583383(-) A-I      intronic
chr5:71557237(-) A-I      intronic
chr5:71612389(-) A-I      intronic
chr5:71614577(-) A-I      intronic
chr5:71615509(-) A-I      intronic
chr5:71615508(-) A-I      intronic
chr5:71614559(-) A-I      intronic
chr5:71614509(-) A-I      intronic
chr5:71516191(-) A-I      3'UTR
chr5:71516200(-) A-I      3'UTR
chr5:71516273(-) A-I      3'UTR
chr5:71579977(-) A-I      intronic
chr5:71557217(-) A-I      intronic
chr5:71614499(-) A-I      intronic
chr5:71538415(-) A-I      intronic
chr5:71615535(-) A-I      intronic
chr5:71575412(-) A-I      intronic
chr5:71583425(-) A-I      intronic
chr5:71584132(-) A-I      intronic
chr5:71545641(-) A-I      intronic
chr5:71611302(-) A-I      intronic
chr5:71557256(-) A-I      intronic
chr5:71537095(-) A-I      intronic
chr5:71612332(-) A-I      intronic
chr5:71537109(-) A-I      intronic
chr5:71611204(-) A-I      intronic
chr5:71516263(-) A-I      3'UTR
chr5:71516267(-) A-I      3'UTR
chr5:71516145(-) A-I      3'UTR
chr5:71516156(-) A-I      3'UTR
chr5:71516168(-) A-I      3'UTR
chr5:71516292(-) A-I      3'UTR
chr5:71516185(-) A-I      3'UTR
chr5:71516103(-) A-I      3'UTR
chr5:71583284(-) A-I      intronic
chr5:71612306(-) A-I      intronic
chr5:71537111(-) A-I      intronic
chr5:71612277(-) A-I      intronic
chr5:71575333(-) A-I      intronic
chr5:71605358(-) A-I      intronic
chr5:71612263(-) A-I      intronic
chr5:71612201(-) A-I      intronic
chr5:71551015(-) A-I      intronic
chr5:71614582(-) A-I      intronic
chr5:71611166(-) A-I      intronic
chr5:71584199(-) A-I      intronic
chr5:71607925(-) A-I      intronic
chr5:71607775(-) A-I      intronic
chr5:71538457(-) A-I      intronic
chr5:71613569(-) A-I      intronic
chr5:71612822(-) A-I      intronic
chr5:71612837(-) A-I      intronic
chr5:71608621(-) A-I      intronic
chr5:71612226(-) A-I      intronic
chr5:71581583(-) A-I      intronic
chr5:71612423(-) A-I      intronic
chr5:71584233(-) A-I      intronic
chr5:71608659(-) A-I      intronic
chr5:71557273(-) A-I      intronic
chr5:71555200(-) A-I      intronic
chr5:71607837(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MRPS27
chr5:71517087(-) A-I intron -    22327324
chr5:71537052(-) A-G intron -    22484847
chr5:71537095(-) A-G intron -    22484847
chr5:71537109(-) A-G intron -    22484847
chr5:71537111(-) A-G intron -    22484847
chr5:71538415(-) A-G intron -    22484847
chr5:71553724(-) T-C intron -    22484847
chr5:71555200(-) A-G intron -    22484847
chr5:71555212(-) A-G intron -    22484847
chr5:71557217(-) A-G intron -    22484847
chr5:71557256(-) A-G intron -    22484847
chr5:71557273(-) A-G intron -    22484847
chr5:71557280(-) A-G intron -    22484847
chr5:71575333(-) A-G intron -    22484847
chr5:71575412(-) A-G intron -    22484847
chr5:71581583(-) A-G intron -    22484847
chr5:71585387(-) A-G intron -    22484847
chr5:71607775(-) A-G intron -    22484847
chr5:71608659(-) A-G intron -    22484847
chr5:71612263(-) A-G intron -    22484847
chr5:71612267(-) A-G intron -    22484847
chr5:71612271(-) A-G intron -    22484847
chr5:71612277(-) A-G intron -    22484847
chr5:71612306(-) A-G intron -    22484847
chr5:71612332(-) A-G intron -    22484847
chr5:71612354(-) A-G intron -    22484847
chr5:71612373(-) A-G intron -    22484847
chr5:71612428(-) A-G intron -    22484847
chr5:71612468(-) A-G intron -    22484847
chr5:71612734(-) A-G intron -    22484847
chr5:71612747(-) A-G intron -    22484847
chr5:71612837(-) A-G intron -    22484847
chr5:71613569(-) A-G intron -    22484847
chr5:71614499(-) A-G intron -    22484847
chr5:71614582(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MRPS27
chr5:71515835-71515836(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22575960//22608085
chr5:71515849-71515850(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22575960//22608085
chr5:71515859-71515860(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22575960//22608085
chr5:71515882-71515883(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22575960//22608085
chr5:71515931-71515932(-) Y 3'UTR//exon       26075521
chr5:71515990-71515991(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960
chr5:71516005-71516006(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960
chr5:71516344-71516345(-) m6A 3'UTR//exon//intron       24284625//24209618//27773535
chr5:71516407-71516408(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:71516430-71516431(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:71516496-71516497(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:71516528-71516529(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:71516552-71516553(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:71516660-71516661(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:71516677-71516678(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:71516700-71516701(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:71516801-71516802(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr5:71516826-71516827(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr5:71516868-71516869(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr5:71516891-71516892(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828
chr5:71519550-71519551(-) m6A CDS//exon       27773535//22575960
chr5:71519561-71519562(-) m6A CDS//exon       27773535//22575960
chr5:71519578-71519579(-) m6A CDS//exon       27773535//22575960
chr5:71519597-71519598(-) m6A CDS//exon       27773535//22575960
chr5:71521905-71521906(-) m6A CDS//exon       22575960
chr5:71616195-71616196(-) m6A exon       24981863
chr5:71616213-71616214(-) m6A exon       24981863
chr5:71616255-71616256(-) m6A exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MRPS27
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: LNC_004293
Interactor2: MRPS27

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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