Detail Information

Basic Information:


  VIRBase ID:  

HHID00095708

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_004293 DPP3
miRBase
Accession/Entrez ID		 LNC_004293 10072
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - DPPIII

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DPP3
chr11:66276097(+) A-I      intronic
chr11:66265277(+) A-I      intronic
chr11:66265522(+) A-I      intronic
chr11:66265704(+) A-I      intronic
chr11:66265771(+) A-I      intronic
chr11:66248804(+) A-I      intronic
chr11:66271264(+) A-I      intronic
chr11:66265826(+) A-I      intronic
chr11:66265934(+) A-I      intronic
chr11:66253492(+) A-I      intronic
chr11:66266579(+) A-I      intronic
chr11:66266661(+) A-I      intronic
chr11:66267563(+) A-I      intronic
chr11:66267648(+) A-I      intronic
chr11:66267649(+) A-I      intronic
chr11:66268398(+) A-I      intronic
chr11:66269120(+) A-I      intronic
chr11:66248704(+) A-I      intronic
chr11:66269444(+) A-I      intronic
chr11:66269543(+) A-I      intronic
chr11:66265463(+) A-I      intronic
chr11:66269557(+) A-I      intronic
chr11:66269612(+) A-I      intronic
chr11:66270015(+) A-I      intronic
chr11:66270146(+) A-I      intronic
chr11:66270211(+) A-I      intronic
chr11:66248847(+) A-I      intronic
chr11:66270317(+) A-I      intronic
chr11:66270332(+) A-I      intronic
chr11:66268728(+) A-I      intronic
chr11:66270539(+) A-I      intronic
chr11:66274817(+) A-I      intronic
chr11:66274908(+) A-I      intronic
chr11:66273520(+) A-I      intronic
chr11:66265241(+) A-I      intronic
chr11:66275310(+) A-I      intronic
chr11:66270552(+) A-I      intronic
chr11:66276093(+) A-I      intronic
chr11:66276105(+) A-I      intronic
chr11:66276111(+) A-I      intronic
chr11:66269110(+) A-I      intronic
chr11:66275345(+) A-I      intronic
chr11:66270209(+) A-I      intronic
chr11:66270258(+) A-I      intronic
chr11:66248882(+) A-I      intronic
chr11:66248840(+) A-I      intronic
chr11:66257543(+) A-I      intronic
chr11:66248696(+) A-I      intronic
chr11:66268336(+) A-I      intronic
chr11:66248910(+) A-I      intronic
chr11:66248911(+) A-I      intronic
chr11:66255868(+) A-I      intronic
chr11:66256436(+) A-I      intronic
chr11:66256440(+) A-I      intronic
chr11:66256494(+) A-I      intronic
chr11:66256529(+) A-I      intronic
chr11:66256558(+) A-I      intronic
chr11:66258340(+) A-I      intronic
chr11:66256502(+) A-I      intronic
chr11:66258345(+) A-I      intronic
chr11:66258423(+) A-I      intronic
chr11:66265265(+) A-I      intronic
chr11:66250750(+) A-I      intronic
chr11:66271827(+) A-I      intronic
chr11:66273196(+) A-I      intronic
chr11:66270197(+) A-I      intronic
chr11:66270611(+) A-I      intronic
chr11:66249299(+) A-I      intronic
chr11:66248945(+) A-I      intronic
chr11:66265487(+) A-I      intronic
chr11:66265588(+) A-I      intronic
chr11:66249316(+) A-I      intronic
chr11:66249218(+) A-I      intronic
chr11:66270231(+) A-I      intronic
chr11:66267663(+) A-I      intronic
chr11:66270579(+) A-I      intronic
chr11:66249219(+) A-I      intronic
chr11:66256437(+) A-I      intronic
chr11:66258341(+) A-I      intronic
chr11:66256839(+) A-I      intronic
chr11:66269879(+) A-I      intronic
chr11:66248778(+) A-I      intronic
chr11:66249393(+) A-I      intronic
chr11:66269878(+) A-I      intronic
chr11:66276094(+) A-I      intronic
chr11:66265897(+) A-I      intronic
chr11:66275348(+) A-I      intronic
chr11:66258380(+) A-I      intronic
chr11:66275288(+) A-I      intronic
chr11:66276270(+) A-I      intronic
chr11:66265521(+) A-I      intronic
chr11:66271762(+) A-I      intronic
chr11:66249275(+) A-I      intronic
chr11:66270142(+) A-I      intronic
chr11:66276264(+) A-I      intronic
chr11:66271749(+) A-I      intronic
chr11:66265228(+) A-I      intronic
chr11:66265306(+) A-I      intronic
chr11:66276185(+) A-I      intronic
chr11:66273225(+) A-I      intronic
chr11:66256385(+) A-I      intronic
chr11:66265694(+) A-I      intronic
chr11:66248881(+) A-I      intronic
chr11:66249306(+) A-I      intronic
chr11:66270115(+) A-I      intronic
chr11:66269613(+) A-I      intronic
chr11:66248705(+) A-I      intronic
chr11:66268738(+) A-I      intronic
chr11:66248944(+) A-I      intronic
chr11:66270557(+) A-I      intronic
chr11:66273697(+) A-I      intronic
chr11:66271820(+) A-I      intronic
chr11:66271204(+) A-I      intronic
chr11:66270585(+) A-I      intronic
chr11:66270621(+) A-I      intronic
chr11:66248727(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DPP3
chr11:66257543(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DPP3
chr11:66248259-66248260(+) m6A 5'UTR//intron       24981863
chr11:66249631-66249632(+) m6A 5'UTR//intron       24981863
chr11:66249678-66249679(+) m6A CDS//exon//intron       24284625//24981863
chr11:66249723-66249724(+) m6A CDS//exon//intron       24284625//24981863
chr11:66249824-66249825(+) m6A 5'UTR//CDS//exon//intron       24284625
chr11:66262709-66262710(+) m6A CDS//exon       24284625
chr11:66276828-66276829(+) m6A 3'UTR       24981863
chr11:66277101-66277102(+) m6A 3'UTR       27773535
chr11:66277118-66277119(+) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate DPP3
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_004293
Interactor2: DPP3

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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