Detail Information

Basic Information:


  VIRBase ID:  

HHID00095655

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_002560 HCK
miRBase
Accession/Entrez ID		 LNC_002560 3055
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - JTK9//p59Hck//p61Hck

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HCK
chr20:30684923(+) A-I      intronic
chr20:30684882(+) A-I      intronic
chr20:30683158(+) A-I      intronic
chr20:30684918(+) A-I      intronic
chr20:30682250(+) A-I      intronic
chr20:30683834(+) A-I      intronic
chr20:30683835(+) A-I      intronic
chr20:30679557(+) A-I      intronic
chr20:30679560(+) A-I      intronic
chr20:30682205(+) A-I      intronic
chr20:30683873(+) A-I      intronic
chr20:30683882(+) A-I      intronic
chr20:30682273(+) A-I      intronic
chr20:30683940(+) A-I      intronic
chr20:30683955(+) A-I      intronic
chr20:30679534(+) A-I      intronic
chr20:30682268(+) A-I      intronic
chr20:30682227(+) A-I      intronic
chr20:30683282(+) A-I      intronic
chr20:30665512(+) A-I      intronic
chr20:30668034(+) A-I      intronic
chr20:30668167(+) A-I      intronic
chr20:30668191(+) A-I      intronic
chr20:30668274(+) A-I      intronic
chr20:30668684(+) A-I      intronic
chr20:30673052(+) A-I      intronic
chr20:30673100(+) A-I      intronic
chr20:30685239(+) A-I      intronic
chr20:30685032(+) A-I      intronic
chr20:30684905(+) A-I      intronic
chr20:30684904(+) A-I      intronic
chr20:30684434(+) A-I      intronic
chr20:30684404(+) A-I      intronic
chr20:30679533(+) A-I      intronic
chr20:30683281(+) A-I      intronic
chr20:30683133(+) A-I      intronic
chr20:30683139(+) A-I      intronic
chr20:30683280(+) A-I      intronic
chr20:30683220(+) A-I      intronic
chr20:30683198(+) A-I      intronic
chr20:30683188(+) A-I      intronic
chr20:30683176(+) A-I      intronic
chr20:30685950(+) A-I      intronic
chr20:30641304(+) A-I      intronic
chr20:30641386(+) A-I      intronic
chr20:30641391(+) A-I      intronic
chr20:30641423(+) A-I      intronic
chr20:30642184(+) A-I      intronic
chr20:30645147(+) A-I      intronic
chr20:30645274(+) A-I      intronic
chr20:30647338(+) A-I      intronic
chr20:30647430(+) A-I      intronic
chr20:30647447(+) A-I      intronic
chr20:30648123(+) A-I      intronic
chr20:30682478(+) A-I      intronic
chr20:30648213(+) A-I      intronic
chr20:30648298(+) A-I      intronic
chr20:30649762(+) A-I      intronic
chr20:30651168(+) A-I      intronic
chr20:30652059(+) A-I      intronic
chr20:30654176(+) A-I      intronic
chr20:30654179(+) A-I      intronic
chr20:30685311(+) A-I      intronic
chr20:30654195(+) A-I      intronic
chr20:30654316(+) A-I      intronic
chr20:30654384(+) A-I      intronic
chr20:30655880(+) A-I      intronic
chr20:30655910(+) A-I      intronic
chr20:30655914(+) A-I      intronic
chr20:30656502(+) A-I      intronic
chr20:30656521(+) A-I      intronic
chr20:30663950(+) A-I      intronic
chr20:30664731(+) A-I      intronic
chr20:30682275(+) A-I      intronic
chr20:30664842(+) A-I      intronic
chr20:30665430(+) A-I      intronic
chr20:30665447(+) A-I      intronic
chr20:30665469(+) A-I      intronic
chr20:30687772(+) A-I      intronic
chr20:30687796(+) A-I      intronic
chr20:30682436(+) A-I      intronic
chr20:30682420(+) A-I      intronic
chr20:30682329(+) A-I      intronic
chr20:30682320(+) A-I      intronic
chr20:30673088(+) A-I      intronic
chr20:30651287(+) A-I      intronic
chr20:30668436(+) A-I      intronic
chr20:30683276(+) A-I      intronic
chr20:30645296(+) A-I      intronic
chr20:30685003(+) A-I      intronic
chr20:30679593(+) A-I      intronic
chr20:30651240(+) A-I      intronic
chr20:30663864(+) A-I      intronic
chr20:30680887(+) A-I      intronic
chr20:30684567(+) A-I      intronic
chr20:30682323(+) A-I      intronic
chr20:30647505(+) A-I      intronic
chr20:30684502(+) A-I      intronic
chr20:30664882(+) A-I      intronic
chr20:30645390(+) A-I      intronic
chr20:30684189(+) A-I      intronic
chr20:30683670(+) A-I      intronic
chr20:30685738(+) A-I      intronic
chr20:30668371(+) A-I      intronic
chr20:30682435(+) A-I      intronic
chr20:30685271(+) A-I      intronic
chr20:30680822(+) A-I      intronic
chr20:30664061(+) A-I      intronic
chr20:30668377(+) A-I      intronic
chr20:30685722(+) A-I      intronic
chr20:30682416(+) A-I      intronic
chr20:30651265(+) A-I      intronic
chr20:30684450(+) A-I      intronic
chr20:30683216(+) A-I      intronic
chr20:30683867(+) A-I      intronic
chr20:30680827(+) A-I      intronic
chr20:30684439(+) A-I      intronic
chr20:30683762(+) A-I      intronic
chr20:30686152(+) A-I      intronic
chr20:30654254(+) A-I      intronic
chr20:30682318(+) A-I      intronic
chr20:30683936(+) A-I      intronic
chr20:30666484(+) A-I      intronic
chr20:30645256(+) A-I      intronic
chr20:30646214(+) A-I      intronic
chr20:30684482(+) A-I      intronic
chr20:30682340(+) A-I      intronic
chr20:30668741(+) A-I      intronic
chr20:30682392(+) A-I      intronic
chr20:30684494(+) A-I      intronic
chr20:30644159(+) A-I      intronic
chr20:30682411(+) A-I      intronic
chr20:30648307(+) A-I      intronic
chr20:30673197(+) A-I      intronic
chr20:30664768(+) A-I      intronic
chr20:30644153(+) A-I      intronic
chr20:30680995(+) A-I      intronic
chr20:30684470(+) A-I      intronic
chr20:30686248(+) A-I      intronic
chr20:30685033(+) A-I      intronic
chr20:30668426(+) A-I      intronic
chr20:30686245(+) A-I      intronic
chr20:30666539(+) A-I      intronic
chr20:30673161(+) A-I      intronic
chr20:30668855(+) A-I      intronic
chr20:30654227(+) A-I      intronic
chr20:30651149(+) A-I      intronic
chr20:30654325(+) A-I      intronic
chr20:30679665(+) A-I      intronic
chr20:30683107(+) A-I      intronic
chr20:30651125(+) A-I      intronic
chr20:30668414(+) A-I      intronic
chr20:30683757(+) A-I      intronic
chr20:30648221(+) A-I      intronic
chr20:30685747(+) A-I      intronic
chr20:30684444(+) A-I      intronic
chr20:30668788(+) A-I      intronic
chr20:30682336(+) A-I      intronic
chr20:30682384(+) A-I      intronic
chr20:30668682(+) A-I      intronic
chr20:30684935(+) A-I      intronic
chr20:30644129(+) A-I      intronic
chr20:30668438(+) A-I      intronic
chr20:30684979(+) A-I      intronic
chr20:30683793(+) A-I      intronic
chr20:30646256(+) A-I      intronic
chr20:30684405(+) A-I      intronic
chr20:30683159(+) A-I      intronic
chr20:30683932(+) A-I      intronic
chr20:30665518(+) A-I      intronic
chr20:30641281(+) A-I      intronic
chr20:30686012(+) A-I      intronic
chr20:30685095(+) A-I      intronic
chr20:30683854(+) A-I      intronic
chr20:30685338(+) A-I      intronic
chr20:30645292(+) A-I      intronic
chr20:30668675(+) A-I      intronic
chr20:30684488(+) A-I      intronic
chr20:30656576(+) A-I      intronic
chr20:30668676(+) A-I      intronic
chr20:30683964(+) A-I      intronic
chr20:30668328(+) A-I      intronic
chr20:30645207(+) A-I      intronic
chr20:30681022(+) A-I      intronic
chr20:30679651(+) A-I      intronic
chr20:30673170(+) A-I      intronic
chr20:30679685(+) A-I      intronic
chr20:30656626(+) A-I      intronic
chr20:30685261(+) A-I      intronic
chr20:30648055(+) A-I      intronic
chr20:30646188(+) A-I      intronic
chr20:30684573(+) A-I      intronic
chr20:30668745(+) A-I      intronic
chr20:30685340(+) A-I      intronic
chr20:30682406(+) A-I      intronic
chr20:30682321(+) A-I      intronic
chr20:30683858(+) A-I      intronic
chr20:30670395(+) A-I      intronic
chr20:30685951(+) A-I      intronic
chr20:30686025(+) A-I      intronic
chr20:30663215(+) A-I      intronic
chr20:30680933(+) A-I      intronic
chr20:30684046(+) A-I      intronic
chr20:30682241(+) A-I      intronic
chr20:30668799(+) A-I      intronic
chr20:30680852(+) A-I      intronic
chr20:30644161(+) A-I      intronic
chr20:30684408(+) A-I      intronic
chr20:30680928(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED HCK
chr20:30682478(+) A-I intron -    21960545
chr20:30671453(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HCK
chr20:30640103-30640104(+) m6A 5'UTR//exon       24981863
chr20:30640109-30640110(+) m6A 5'UTR//exon       24981863
chr20:30640209-30640210(+) m6A 5'UTR//exon       -
chr20:30689330-30689331(+) m6A 3'UTR       -
chr20:30689420-30689421(+) m6A 3'UTR       25456834
chr20:30689474-30689475(+) m6A 3'UTR       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate HCK
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_002560
Interactor2: HCK

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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