Detail Information

Basic Information:


  VIRBase ID:  

HHID00095628

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_002392 PIK3C2B
miRBase
Accession/Entrez ID		 LNC_002392 5287
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - C2-PI3K

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PIK3C2B
chr1:204443317(-) A-I      intronic
chr1:204443298(-) A-I      intronic
chr1:204443294(-) A-I      intronic
chr1:204443292(-) A-I      intronic
chr1:204443290(-) A-I      intronic
chr1:204443287(-) A-I      intronic
chr1:204443284(-) A-I      intronic
chr1:204398108(-) A-I      intronic
chr1:204443326(-) A-I      intronic
chr1:204451673(-) A-I      intronic
chr1:204451660(-) A-I      intronic
chr1:204456272(-) A-I      intronic
chr1:204454910(-) A-I      intronic
chr1:204456261(-) A-I      intronic
chr1:204455642(-) A-I      intronic
chr1:204455624(-) A-I      intronic
chr1:204455616(-) A-I      intronic
chr1:204455615(-) A-I      intronic
chr1:204452397(-) A-I      intronic
chr1:204452378(-) A-I      intronic
chr1:204452372(-) A-I      intronic
chr1:204443320(-) A-I      intronic
chr1:204441388(-) A-I      intronic
chr1:204454809(-) A-I      intronic
chr1:204456243(-) A-I      intronic
chr1:204454784(-) A-I      intronic
chr1:204423368(-) A-I      intronic
chr1:204456134(-) A-I      intronic
chr1:204456129(-) A-I      intronic
chr1:204456057(-) A-I      intronic
chr1:204451829(-) A-I      intronic
chr1:204397759(-) A-I      intronic
chr1:204421417(-) A-I      intronic
chr1:204421984(-) A-I      intronic
chr1:204397786(-) A-I      intronic
chr1:204417758(-) A-I      intronic
chr1:204417366(-) A-I      intronic
chr1:204397790(-) A-I      intronic
chr1:204421990(-) A-I      intronic
chr1:204397793(-) A-I      intronic
chr1:204397795(-) A-I      intronic
chr1:204417362(-) A-I      intronic
chr1:204423553(-) A-I      intronic
chr1:204423082(-) A-I      intronic
chr1:204406369(-) A-I      intronic
chr1:204397797(-) A-I      intronic
chr1:204422076(-) A-I      intronic
chr1:204398330(-) A-I      intronic
chr1:204398312(-) A-I      intronic
chr1:204398310(-) A-I      intronic
chr1:204421511(-) A-I      intronic
chr1:204451721(-) A-I      intronic
chr1:204398244(-) A-I      intronic
chr1:204422954(-) A-I      intronic
chr1:204398216(-) A-I      intronic
chr1:204451672(-) A-I      intronic
chr1:204421855(-) A-I      intronic
chr1:204398149(-) A-I      intronic
chr1:204445579(-) A-I      intronic
chr1:204439433(-) A-I      intronic
chr1:204423501(-) A-I      intronic
chr1:204397834(-) A-I      intronic
chr1:204441907(-) A-I      intronic
chr1:204397857(-) A-I      intronic
chr1:204456003(-) A-I      intronic
chr1:204441512(-) A-I      intronic
chr1:204398095(-) A-I      intronic
chr1:204423106(-) A-I      intronic
chr1:204397730(-) A-I      intronic
chr1:204455840(-) A-I      intronic
chr1:204441403(-) A-I      intronic
chr1:204455811(-) A-I      intronic
chr1:204397721(-) A-I      intronic
chr1:204441389(-) A-I      intronic
chr1:204423027(-) A-I      intronic
chr1:204398160(-) A-I      intronic
chr1:204454883(-) A-I      intronic
chr1:204454882(-) A-I      intronic
chr1:204398135(-) A-I      intronic
chr1:204439434(-) A-I      intronic
chr1:204454866(-) A-I      intronic
chr1:204452304(-) A-I      intronic
chr1:204454842(-) A-I      intronic
chr1:204454297(-) A-I      intronic
chr1:204456241(-) A-I      intronic
chr1:204456100(-) A-I      intronic
chr1:204451850(-) A-I      intronic
chr1:204456047(-) A-I      intronic
chr1:204455411(-) A-I      intronic
chr1:204423583(-) A-I      intronic
chr1:204458440(-) A-I      intronic
chr1:204423175(-) A-I      intronic
chr1:204456240(-) A-I      intronic
chr1:204445635(-) A-I      intronic
chr1:204456105(-) A-I      intronic
chr1:204454900(-) A-I      intronic
chr1:204417502(-) A-I      intronic
chr1:204455614(-) A-I      intronic
chr1:204455369(-) A-I      intronic
chr1:204423096(-) A-I      intronic
chr1:204456149(-) A-I      intronic
chr1:204456262(-) A-I      intronic
chr1:204452379(-) A-I      intronic
chr1:204421942(-) A-I      intronic
chr1:204456307(-) A-I      intronic
chr1:204455763(-) A-I      intronic
chr1:204423412(-) A-I      intronic
chr1:204453707(-) A-I      intronic
chr1:204450550(-) A-I      intronic
chr1:204455819(-) A-I      intronic
chr1:204456312(-) A-I      intronic
chr1:204423122(-) A-I      intronic
chr1:204452305(-) A-I      intronic
chr1:204423085(-) A-I      intronic
chr1:204443301(-) A-I      intronic
chr1:204451772(-) A-I      intronic
chr1:204423354(-) A-I      intronic
chr1:204445552(-) A-I      intronic
chr1:204417756(-) A-I      intronic
chr1:204452406(-) A-I      intronic
chr1:204397696(-) A-I      intronic
chr1:204421989(-) A-I      intronic
chr1:204422998(-) A-I      intronic
chr1:204421554(-) A-I      intronic
chr1:204458499(-) A-I      intronic
chr1:204417760(-) A-I      intronic
chr1:204455676(-) A-I      intronic
chr1:204455358(-) A-I      intronic
chr1:204449133(-) A-I      intronic
chr1:204423421(-) A-I      intronic
chr1:204450515(-) A-I      intronic
chr1:204454945(-) A-I      intronic
chr1:204421845(-) A-I      intronic
chr1:204452306(-) A-I      intronic
chr1:204451874(-) A-I      intronic
chr1:204452332(-) A-I      intronic
chr1:204455361(-) A-I      intronic
chr1:204455662(-) A-I      intronic
chr1:204423446(-) A-I      intronic
chr1:204454873(-) A-I      intronic
chr1:204421575(-) A-I      intronic
chr1:204454810(-) A-I      intronic
chr1:204427798(-) A-I      intronic
chr1:204397917(-) A-I      intronic
chr1:204454972(-) A-I      intronic
chr1:204441563(-) A-I      intronic
chr1:204443356(-) A-I      intronic
chr1:204421589(-) A-I      intronic
chr1:204456392(-) A-I      intronic
chr1:204420333(-) A-I      intronic
chr1:204398134(-) A-I      intronic
chr1:204423176(-) A-I      intronic
chr1:204421885(-) A-I      intronic
chr1:204452307(-) A-I      intronic
chr1:204456281(-) A-I      intronic
chr1:204445590(-) A-I      intronic
chr1:204445442(-) A-I      intronic
chr1:204417339(-) A-I      intronic
chr1:204454828(-) A-I      intronic
chr1:204453762(-) A-I      intronic
chr1:204455352(-) A-I      intronic
chr1:204417644(-) A-I      intronic
chr1:204456336(-) A-I      intronic
chr1:204423107(-) A-I      intronic
chr1:204456239(-) A-I      intronic
chr1:204445664(-) A-I      intronic
chr1:204450657(-) A-I      intronic
chr1:204441881(-) A-I      intronic
chr1:204452438(-) A-I      intronic
chr1:204423040(-) A-I      intronic
chr1:204417379(-) A-I      intronic
chr1:204454870(-) A-I      intronic
chr1:204421921(-) A-I      intronic
chr1:204441759(-) A-I      intronic
chr1:204423466(-) A-I      intronic
chr1:204454331(-) A-I      intronic
chr1:204456362(-) A-I      intronic
chr1:204423121(-) A-I      intronic
chr1:204423170(-) A-I      intronic
chr1:204453754(-) A-I      intronic
chr1:204454769(-) A-I      intronic
chr1:204452437(-) A-I      intronic
chr1:204456135(-) A-I      intronic
chr1:204423443(-) A-I      intronic
chr1:204441856(-) A-I      intronic
chr1:204423066(-) A-I      intronic
chr1:204441903(-) A-I      intronic
chr1:204398117(-) A-I      intronic
chr1:204441825(-) A-I      intronic
chr1:204454314(-) A-I      intronic
chr1:204456107(-) A-I      intronic
chr1:204452475(-) A-I      intronic
chr1:204445482(-) A-I      intronic
chr1:204423563(-) A-I      intronic
chr1:204423488(-) A-I      intronic
chr1:204397848(-) A-I      intronic
chr1:204422061(-) A-I      intronic
chr1:204392481(-) A-I      3'UTR
chr1:204458420(-) A-I      intronic
chr1:204441901(-) A-I      intronic
chr1:204455988(-) A-I      intronic
chr1:204454889(-) A-I      intronic
chr1:204454820(-) A-I      intronic
chr1:204417682(-) A-I      intronic
chr1:204454895(-) A-I      intronic
chr1:204454915(-) A-I      intronic
chr1:204423498(-) A-I      intronic
chr1:204445874(-) A-I      intronic
chr1:204423338(-) A-I      intronic
chr1:204452380(-) A-I      intronic
chr1:204445455(-) A-I      intronic
chr1:204423039(-) A-I      intronic
chr1:204458410(-) A-I      intronic
chr1:204423547(-) A-I      intronic
chr1:204422967(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PIK3C2B
chr1:204392433(-) A-C exon 3'UTR    21725310
chr1:204417644(-) A-G intron -    22484847
chr1:204417682(-) A-G intron -    22484847
chr1:204421985(-) A-T intron -    22484847
chr1:204423040(-) A-G intron -    22484847
chr1:204423085(-) A-G intron -    22484847
chr1:204423096(-) A-G intron -    22484847
chr1:204423107(-) A-G intron -    22484847
chr1:204423412(-) A-G intron -    22484847
chr1:204423421(-) A-G intron -    22484847
chr1:204423443(-) A-G intron -    22484847
chr1:204423466(-) A-G intron -    22484847
chr1:204423547(-) A-G intron -    22484847
chr1:204441903(-) A-G intron -    22484847
chr1:204452305(-) A-G intron -    22484847
chr1:204452306(-) A-G intron -    22484847
chr1:204452307(-) A-G intron -    22484847
chr1:204452406(-) A-G intron -    22484847
chr1:204455662(-) A-G intron -    22484847
chr1:204455763(-) A-G intron -    22484847
chr1:204455819(-) A-G intron -    22484847
chr1:204456135(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PIK3C2B
chr1:204392816-204392817(-) m6A 3'UTR       24981863
chr1:204392843-204392844(-) m6A 3'UTR       24981863
chr1:204392871-204392872(-) m6A 3'UTR       24981863//27773535
chr1:204393339-204393340(-) m6A 3'UTR       24284625//25456834//27773535//22575960
chr1:204393377-204393378(-) m6A 3'UTR       24284625//25456834//27773535//22575960
chr1:204393427-204393428(-) m6A 3'UTR       24284625//25456834//27773535//22575960
chr1:204393489-204393490(-) m6A 3'UTR       25456834//24981863//27773535//22575960
chr1:204393518-204393519(-) m6A 3'UTR       24981863
chr1:204393527-204393528(-) m6A 3'UTR       24981863
chr1:204393582-204393583(-) m6A 3'UTR       24981863
chr1:204393783-204393784(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22575960//22608085
chr1:204393788-204393789(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22575960//22608085
chr1:204393816-204393817(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22575960//22608085
chr1:204393907-204393908(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22575960
chr1:204393922-204393923(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22575960
chr1:204394023-204394024(-) m6A CDS       24284625//27371828//22575960
chr1:204394040-204394041(-) m6A CDS       24284625//27371828//22575960
chr1:204394061-204394062(-) m6A CDS       24284625//27371828//22575960
chr1:204396815-204396816(-) m6A CDS       27773535
chr1:204401410-204401411(-) m6A CDS       27773535
chr1:204403725-204403726(-) m6A CDS       22575960
chr1:204408092-204408093(-) m6A CDS       24284625//22575960
chr1:204408105-204408106(-) m6A CDS       24284625//22575960
chr1:204408120-204408121(-) m6A CDS       24284625//22575960
chr1:204408169-204408170(-) m6A CDS       24284625
chr1:204409366-204409367(-) m6A CDS       24284625
chr1:204418328-204418329(-) m6A CDS//exon       -
chr1:204426926-204426927(-) m6A CDS       24284625
chr1:204426997-204426998(-) m6A CDS       24284625
chr1:204429461-204429462(-) m6A CDS       27371828
chr1:204429499-204429500(-) m6A CDS       27371828
chr1:204433705-204433706(-) m6A CDS       27773535
chr1:204435950-204435951(-) m6A CDS//intron       24284625
chr1:204438019-204438020(-) m6A CDS       24284625//25456834
chr1:204438095-204438096(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:204438114-204438115(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:204438127-204438128(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:204438139-204438140(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:204438250-204438251(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr1:204438307-204438308(-) Tm CDS       -
chr1:204438327-204438328(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr1:204438342-204438343(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:204438471-204438472(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:204438493-204438494(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:204438501-204438502(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:204438553-204438554(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:204438704-204438705(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:204438733-204438734(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:204438769-204438770(-) m6A CDS       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:204438790-204438791(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr1:204438903-204438904(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr1:204438959-204438960(-) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr1:204438982-204438983(-) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr1:204439005-204439006(-) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr1:204458975-204458976(-) m6A 5'UTR//intron       24284625//24981863//27371828//27773536//22608085
chr1:204459039-204459040(-) m6A 5'UTR//intron       24284625//27371828//22575960
chr1:204459248-204459249(-) m6A 5'UTR//intron       24284625//22575960
chr1:204459325-204459326(-) m6A 5'UTR//intron       24284625//22575960
chr1:204459375-204459376(-) m6A 5'UTR//intron       -
chr1:204463521-204463522(-) m6A 5'UTR       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PIK3C2B
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_002392
Interactor2: PIK3C2B

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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