Detail Information

Basic Information:


  VIRBase ID:  

HHID00095570

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_002005 GNG2
miRBase
Accession/Entrez ID		 LNC_002005 54331
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GNG2
chr14:52384605(+) A-I      intronic
chr14:52384579(+) A-I      intronic
chr14:52384584(+) A-I      intronic
chr14:52384685(+) A-I      intronic
chr14:52341208(+) A-I      intronic
chr14:52369622(+) A-I      intronic
chr14:52385803(+) A-I      intronic
chr14:52385717(+) A-I      intronic
chr14:52385710(+) A-I      intronic
chr14:52385642(+) A-I      intronic
chr14:52385591(+) A-I      intronic
chr14:52341303(+) A-I      intronic
chr14:52384585(+) A-I      intronic
chr14:52384515(+) A-I      intronic
chr14:52378468(+) A-I      intronic
chr14:52378341(+) A-I      intronic
chr14:52378331(+) A-I      intronic
chr14:52378315(+) A-I      intronic
chr14:52378298(+) A-I      intronic
chr14:52369355(+) A-I      intronic
chr14:52342949(+) A-I      intronic
chr14:52342717(+) A-I      intronic
chr14:52342714(+) A-I      intronic
chr14:52341108(+) A-I      intronic
chr14:52341103(+) A-I      intronic
chr14:52368147(+) A-I      intronic
chr14:52384560(+) A-I      intronic
chr14:52385804(+) A-I      intronic
chr14:52341093(+) A-I      intronic
chr14:52369464(+) A-I      intronic
chr14:52369485(+) A-I      intronic
chr14:52368094(+) A-I      intronic
chr14:52385643(+) A-I      intronic
chr14:52369401(+) A-I      intronic
chr14:52385596(+) A-I      intronic
chr14:52385726(+) A-I      intronic
chr14:52384499(+) A-I      intronic
chr14:52368008(+) A-I      intronic
chr14:52378336(+) A-I      intronic
chr14:52369526(+) A-I      intronic
chr14:52396200(+) A-I      intronic
chr14:52368163(+) A-I      intronic
chr14:52369333(+) A-I      intronic
chr14:52384673(+) A-I      intronic
chr14:52367971(+) A-I      intronic
chr14:52368186(+) A-I      intronic
chr14:52385673(+) A-I      intronic
chr14:52341300(+) A-I      intronic
chr14:52384583(+) A-I      intronic
chr14:52385598(+) A-I      intronic
chr14:52369461(+) A-I      intronic
chr14:52385612(+) A-I      intronic
chr14:52384586(+) A-I      intronic
chr14:52369353(+) A-I      intronic
chr14:52367981(+) A-I      intronic
chr14:52385660(+) A-I      intronic
chr14:52385647(+) A-I      intronic
chr14:52385805(+) A-I      intronic
chr14:52384664(+) A-I      intronic
chr14:52385633(+) A-I      intronic
chr14:52384709(+) A-I      intronic
chr14:52369409(+) A-I      intronic
chr14:52368133(+) A-I      intronic
chr14:52337260(+) A-I      intronic
chr14:52349540(+) A-I      intronic
chr14:52384582(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GNG2
chr14:52369333(+) A-G intron -    22484847
chr14:52369401(+) A-G intron -    22484847
chr14:52369526(+) A-G intron -    22484847
chr14:52384579(+) A-G intron -    22484847
chr14:52384582(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GNG2
chr14:52327326-52327327(+) m6A 5'UTR//intron       24981863
chr14:52327474-52327475(+) m6A 5'UTR//exon//intron       -
chr14:52327488-52327489(+) m6A 5'UTR//exon//intron       -
chr14:52328089-52328090(+) m6A 5'UTR//intron       -
chr14:52340776-52340777(+) m6A 5'UTR//exon//intron       -
chr14:52344366-52344367(+) m6A 5'UTR//CDS//exon//intron       -
chr14:52344422-52344423(+) m6A exon//intron       -
chr14:52433331-52433332(+) m6A 3'UTR//CDS//exon//intron       24981863
chr14:52433364-52433365(+) m6A 3'UTR//CDS//exon//intron       24981863
chr14:52433444-52433445(+) m6A 3'UTR//exon//intron       24981863//26404942
chr14:52433513-52433514(+) m6A 3'UTR//exon//intron       25456834//24981863//26404942//22608085
chr14:52433525-52433526(+) m6A 3'UTR//exon//intron       25456834//24981863//26404942//22608085
chr14:52433615-52433616(+) m6A 3'UTR//exon//intron       24981863//26404942//22608085
chr14:52433948-52433949(+) m6A 3'UTR//intron       26404942
chr14:52433966-52433967(+) m6A 3'UTR//intron       26404942
chr14:52435148-52435149(+) m6A 3'UTR//intron       26404942
chr14:52435365-52435366(+) m6A 3'UTR//intron       26404942
chr14:52435384-52435385(+) m6A 3'UTR//intron       26404942
chr14:52435432-52435433(+) m6A 3'UTR//intron       26404942
chr14:52435460-52435461(+) m6A 3'UTR//intron       26404942
chr14:52435489-52435490(+) m6A 3'UTR//intron       26404942
chr14:52435508-52435509(+) m6A 3'UTR//intron       26404942
chr14:52435975-52435976(+) m6A 3'UTR//intron       26404942
chr14:52436062-52436063(+) m6A 3'UTR//intron       26404942
chr14:52436071-52436072(+) m6A 3'UTR//intron       26404942

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GNG2
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_002005
Interactor2: GNG2

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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