Detail Information

Basic Information:


  VIRBase ID:  

HHID00095564

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_002005 RPS2
miRBase
Accession/Entrez ID		 LNC_002005 6187
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - LLREP3//S2

RNA Editing:


Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RPS2
chr16:2012091(-) A-I exon 3'UTR    22028664
chr16:2012100(-) A-I exon CDS    22028664
chr16:2012105(-) A-I exon CDS    22028664
chr16:2012169(-) A-I exon CDS    22028664
chr16:2012178(-) A-I exon CDS    22028664
chr16:2012181(-) A-I exon CDS    22028664
chr16:2012184(-) A-I exon CDS    22028664
chr16:2012227(-) A-I exon CDS    22028664
chr16:2012232(-) A-I exon CDS    22028664
chr16:2012251(-) A-I exon CDS    22028664
chr16:2012263(-) A-I exon CDS    22028664

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RPS2
chr16:2012127-2012128(-) m6A 3'UTR//CDS//exon       27773535//22575960
chr16:2012154-2012155(-) m6A 3'UTR//CDS//exon       27773535//22575960
chr16:2012205-2012206(-) m6A 3'UTR//CDS//exon       27773535//22575960
chr16:2012241-2012242(-) m6A 3'UTR//CDS//exon       27773535//22575960
chr16:2012320-2012321(-) m6A 3'UTR//intron       27773535
chr16:2012376-2012377(-) m6A 3'UTR//exon//intron       27773535
chr16:2012552-2012553(-) Y 3'UTR//CDS//exon//intron       26075521
chr16:2012770-2012771(-) m6A 3'UTR//CDS//exon//intron       22575960
chr16:2012890-2012891(-) m6A 3'UTR//CDS//exon//intron       -
chr16:2013024-2013025(-) m6A exon//intron       -
chr16:2013038-2013039(-) Am exon//intron       -
chr16:2013672-2013673(-) m6A 3'UTR//exon//intron       27773535
chr16:2013762-2013763(-) m6A CDS//exon//intron       27773535//27371828
chr16:2013805-2013806(-) m6A CDS//exon//intron       24209618//24981863//27773535//27371828//22608085
chr16:2013915-2013916(-) m6A exon//intron       24209618//27371828//22608085
chr16:2013939-2013940(-) m6A exon//intron       24209618//27371828//27773536//22608085
chr16:2013958-2013959(-) m6A exon//intron       24209618//27371828//27773536//22608085
chr16:2014024-2014025(-) m6A exon//intron       27371828//27773536//22608085
chr16:2014328-2014329(-) m6A CDS//exon//intron       24209618//27773536//22575960
chr16:2014564-2014565(-) m6A CDS//exon//intron       22575960
chr16:2014751-2014752(-) m6A 5'UTR//exon//intron       -
chr16:2014810-2014811(-) m6A 5'UTR//exon       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RPS2
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: LNC_002005
Interactor2: RPS2

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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