Detail Information

Basic Information:


  VIRBase ID:  

HHID00095541

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_001940 ARPP19
miRBase
Accession/Entrez ID		 LNC_001940 10776
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - ARPP-16//ARPP-19//ARPP16//ENSAL

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ARPP19
chr15:52840562(-) A-I      3'UTR
chr15:52840572(-) A-I      3'UTR
chr15:52840575(-) A-I      3'UTR
chr15:52850441(-) A-I      intronic
chr15:52840518(-) A-I      3'UTR
chr15:52840540(-) A-I      3'UTR
chr15:52840535(-) A-I      3'UTR
chr15:52840536(-) A-I      3'UTR
chr15:52840521(-) A-I      3'UTR
chr15:52850404(-) A-I      intronic
chr15:52858628(-) A-I      intronic
chr15:52850413(-) A-I      intronic
chr15:52851087(-) A-I      intronic
chr15:52850616(-) A-I      intronic
chr15:52856515(-) A-I      intronic
chr15:52856603(-) A-I      intronic
chr15:52850047(-) A-I      intronic
chr15:52849985(-) A-I      intronic
chr15:52850046(-) A-I      intronic
chr15:52849996(-) A-I      intronic
chr15:52858575(-) A-I      intronic
chr15:52854740(-) A-I      intronic
chr15:52851134(-) A-I      intronic
chr15:52858748(-) A-I      intronic
chr15:52854757(-) A-I      intronic
chr15:52850379(-) A-I      intronic
chr15:52850038(-) A-I      intronic
chr15:52854193(-) A-I      intronic
chr15:52858500(-) A-I      intronic
chr15:52850390(-) A-I      intronic
chr15:52851079(-) A-I      intronic
chr15:52858744(-) A-I      intronic
chr15:52844507(-) A-I      intronic
chr15:52855201(-) A-I      intronic
chr15:52858323(-) A-I      intronic
chr15:52855255(-) A-I      intronic
chr15:52858493(-) A-I      intronic
chr15:52850453(-) A-I      intronic
chr15:52850069(-) A-I      intronic
chr15:52854778(-) A-I      intronic
chr15:52845089(-) A-I      intronic
chr15:52854764(-) A-I      intronic
chr15:52854790(-) A-I      intronic
chr15:52855237(-) A-I      intronic
chr15:52850392(-) A-I      intronic
chr15:52850004(-) A-I      intronic
chr15:52851106(-) A-I      intronic
chr15:52854717(-) A-I      intronic
chr15:52850460(-) A-I      intronic
chr15:52850434(-) A-I      intronic
chr15:52851136(-) A-I      intronic
chr15:52851154(-) A-I      intronic
chr15:52851099(-) A-I      intronic
chr15:52840680(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ARPP19
chr15:52851079(-) A-I intron -    21960545
chr15:52851087(-) A-I intron -    21960545
chr15:52851136(-) A-G intron -    22484847
chr15:52858500(-) A-G intron -    22484847
chr15:52845905(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ARPP19
chr15:52839819-52839820(-) m6A 3'UTR       24981863
chr15:52839984-52839985(-) m6A 3'UTR       24981863//27773535
chr15:52840005-52840006(-) m6A 3'UTR       24981863//27773535
chr15:52840755-52840756(-) m6A 3'UTR       -
chr15:52840784-52840785(-) m6A 3'UTR       -
chr15:52840874-52840875(-) m6A 3'UTR       -
chr15:52841795-52841796(-) Y 3'UTR       25219674
chr15:52843934-52843935(-) m6A 3'UTR       24284625
chr15:52844030-52844031(-) m6A 3'UTR       24284625
chr15:52844117-52844118(-) m6A 3'UTR//exon       24284625
chr15:52844179-52844180(-) m6A CDS//exon       24284625
chr15:52844248-52844249(-) m6A CDS//exon       24284625//27371828
chr15:52849344-52849345(-) m6A CDS//intron       24981863//27773535//27371828
chr15:52849378-52849379(-) m1A CDS//intron       26863196
chr15:52861431-52861432(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ARPP19
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|HeLa-S3 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: LNC_001940
Interactor2: ARPP19

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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