Detail Information

Basic Information:


  VIRBase ID:  

HHID00095540

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_001940 HDAC6
miRBase
Accession/Entrez ID		 LNC_001940 10013
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - CPBHM//HD6//JM21//PPP1R90

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HDAC6
chrX:48669604(+) A-I      intronic
chrX:48669590(+) A-I      intronic
chrX:48669540(+) A-I      intronic
chrX:48671460(+) A-I      intronic
chrX:48668745(+) A-I      intronic
chrX:48668600(+) A-I      intronic
chrX:48668586(+) A-I      intronic
chrX:48668536(+) A-I      intronic
chrX:48668098(+) A-I      intronic
chrX:48671440(+) A-I      intronic
chrX:48668094(+) A-I      intronic
chrX:48668006(+) A-I      intronic
chrX:48669631(+) A-I      intronic
chrX:48669666(+) A-I      intronic
chrX:48668587(+) A-I      intronic
chrX:48669617(+) A-I      intronic
chrX:48669491(+) A-I      intronic
chrX:48667957(+) A-I      intronic
chrX:48668686(+) A-I      intronic
chrX:48669133(+) A-I      intronic
chrX:48667943(+) A-I      intronic
chrX:48671505(+) A-I      intronic
chrX:48671448(+) A-I      intronic
chrX:48668757(+) A-I      intronic
chrX:48671551(+) A-I      intronic
chrX:48668059(+) A-I      intronic
chrX:48669040(+) A-I      intronic
chrX:48668541(+) A-I      intronic
chrX:48669095(+) A-I      intronic
chrX:48669119(+) A-I      intronic
chrX:48675587(+) A-I      intronic
chrX:48679666(+) A-I      intronic
chrX:48668616(+) A-I      intronic
chrX:48671441(+) A-I      intronic
chrX:48669535(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HDAC6
chrX:48660415-48660416(+) m6A 5'UTR//exon//intron       24981863
chrX:48660607-48660608(+) m6A 5'UTR//exon//intron       25456834//24981863
chrX:48661070-48661071(+) m6A 5'UTR//exon//intron       24284625//24981863
chrX:48661143-48661144(+) m1A CDS//exon//intron       26863196
chrX:48661154-48661155(+) m6A CDS//exon//intron       24284625
chrX:48661175-48661176(+) m6A CDS//exon//intron       24284625
chrX:48661204-48661205(+) m6A exon//intron       -
chrX:48661355-48661356(+) m1A CDS//exon       26863196
chrX:48664124-48664125(+) m6A exon//intron       -
chrX:48664526-48664527(+) m6A exon//intron       -
chrX:48664538-48664539(+) m6A exon//intron       -
chrX:48674106-48674107(+) m6A exon//intron       -
chrX:48674117-48674118(+) m6A exon//intron       -
chrX:48681158-48681159(+) m6A CDS//exon       24284625
chrX:48681330-48681331(+) m6A CDS//exon       24284625
chrX:48681340-48681341(+) m6A CDS//exon       24284625//22608085
chrX:48681388-48681389(+) m6A CDS//exon       24284625//24209618//25456834//22575960//22608085
chrX:48681494-48681495(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085
chrX:48681506-48681507(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085
chrX:48681531-48681532(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085
chrX:48681575-48681576(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085
chrX:48681617-48681618(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085
chrX:48681654-48681655(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085
chrX:48681659-48681660(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085
chrX:48681674-48681675(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085
chrX:48681696-48681697(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085
chrX:48681701-48681702(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085
chrX:48681743-48681744(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085
chrX:48681762-48681763(+) Y CDS//exon       26075521
chrX:48681785-48681786(+) m6A CDS//exon       24284625//24209618//24981863
chrX:48681822-48681823(+) m6A CDS//exon       24284625//24209618
chrX:48681827-48681828(+) m6A CDS//exon       24284625//24209618
chrX:48681869-48681870(+) m6A CDS//exon       24284625
chrX:48681891-48681892(+) m6A CDS//exon       24284625
chrX:48681899-48681900(+) m6A CDS//exon       24284625
chrX:48681926-48681927(+) m6A CDS//exon       24284625
chrX:48683188-48683189(+) m6A 3'UTR//exon       24284625
chrX:48683385-48683386(+) m6A 3'UTR//exon       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate HDAC6
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_001940
Interactor2: HDAC6

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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