Detail Information

Basic Information:


  VIRBase ID:  

HHID00095528

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_001582 FAM219A
miRBase
Accession/Entrez ID		 LNC_001582 203259
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - C9orf25

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FAM219A
chr9:34436277(-) A-I      intronic
chr9:34436475(-) A-I      intronic
chr9:34430310(-) A-I      intronic
chr9:34416143(-) A-I      intronic
chr9:34417182(-) A-I      intronic
chr9:34417205(-) A-I      intronic
chr9:34417212(-) A-I      intronic
chr9:34417213(-) A-I      intronic
chr9:34441763(-) A-I      intronic
chr9:34441766(-) A-I      intronic
chr9:34441938(-) A-I      intronic
chr9:34415087(-) A-I      intronic
chr9:34416117(-) A-I      intronic
chr9:34416909(-) A-I      intronic
chr9:34455629(-) A-I      intronic
chr9:34455600(-) A-I      intronic
chr9:34448008(-) A-I      intronic
chr9:34430479(-) A-I      intronic
chr9:34430468(-) A-I      intronic
chr9:34416915(-) A-I      intronic
chr9:34417201(-) A-I      intronic
chr9:34411527(-) A-I      intronic
chr9:34441973(-) A-I      intronic
chr9:34442478(-) A-I      intronic
chr9:34442515(-) A-I      intronic
chr9:34425036(-) A-I      intronic
chr9:34425031(-) A-I      intronic
chr9:34411511(-) A-I      intronic
chr9:34448141(-) A-I      intronic
chr9:34425017(-) A-I      intronic
chr9:34424971(-) A-I      intronic
chr9:34424970(-) A-I      intronic
chr9:34424951(-) A-I      intronic
chr9:34424935(-) A-I      intronic
chr9:34448164(-) A-I      intronic
chr9:34449218(-) A-I      intronic
chr9:34450080(-) A-I      intronic
chr9:34450163(-) A-I      intronic
chr9:34450305(-) A-I      intronic
chr9:34450590(-) A-I      intronic
chr9:34450593(-) A-I      intronic
chr9:34450594(-) A-I      intronic
chr9:34450595(-) A-I      intronic
chr9:34424919(-) A-I      intronic
chr9:34450703(-) A-I      intronic
chr9:34422995(-) A-I      intronic
chr9:34455593(-) A-I      intronic
chr9:34422984(-) A-I      intronic
chr9:34411494(-) A-I      intronic
chr9:34422960(-) A-I      intronic
chr9:34422959(-) A-I      intronic
chr9:34417221(-) A-I      intronic
chr9:34417220(-) A-I      intronic
chr9:34417218(-) A-I      intronic
chr9:34417215(-) A-I      intronic
chr9:34417214(-) A-I      intronic
chr9:34417326(-) A-I      intronic
chr9:34427281(-) A-I      intronic
chr9:34427302(-) A-I      intronic
chr9:34430548(-) A-I      intronic
chr9:34430566(-) A-I      intronic
chr9:34430572(-) A-I      intronic
chr9:34430578(-) A-I      intronic
chr9:34434956(-) A-I      intronic
chr9:34435007(-) A-I      intronic
chr9:34435018(-) A-I      intronic
chr9:34435941(-) A-I      intronic
chr9:34435942(-) A-I      intronic
chr9:34435972(-) A-I      intronic
chr9:34435981(-) A-I      intronic
chr9:34436326(-) A-I      intronic
chr9:34436380(-) A-I      intronic
chr9:34440761(-) A-I      intronic
chr9:34455664(-) A-I      intronic
chr9:34456083(-) A-I      intronic
chr9:34440785(-) A-I      intronic
chr9:34440961(-) A-I      intronic
chr9:34411443(-) A-I      intronic
chr9:34411575(-) A-I      intronic
chr9:34415010(-) A-I      intronic
chr9:34415022(-) A-I      intronic
chr9:34411437(-) A-I      intronic
chr9:34456108(-) A-I      intronic
chr9:34440989(-) A-I      intronic
chr9:34441968(-) A-I      intronic
chr9:34442607(-) A-I      intronic
chr9:34442620(-) A-I      intronic
chr9:34442623(-) A-I      intronic
chr9:34449080(-) A-I      intronic
chr9:34450044(-) A-I      intronic
chr9:34417216(-) A-I      intronic
chr9:34417169(-) A-I      intronic
chr9:34417173(-) A-I      intronic
chr9:34407090(-) A-I      intronic
chr9:34417177(-) A-I      intronic
chr9:34441939(-) A-I      intronic
chr9:34430322(-) A-I      intronic
chr9:34425233(-) A-I      intronic
chr9:34450301(-) A-I      intronic
chr9:34416053(-) A-I      intronic
chr9:34432942(-) A-I      intronic
chr9:34407072(-) A-I      intronic
chr9:34441882(-) A-I      intronic
chr9:34450235(-) A-I      intronic
chr9:34448002(-) A-I      intronic
chr9:34430401(-) A-I      intronic
chr9:34411431(-) A-I      intronic
chr9:34455653(-) A-I      intronic
chr9:34441946(-) A-I      intronic
chr9:34427207(-) A-I      intronic
chr9:34449221(-) A-I      intronic
chr9:34450248(-) A-I      intronic
chr9:34450254(-) A-I      intronic
chr9:34455562(-) A-I      intronic
chr9:34449257(-) A-I      intronic
chr9:34450053(-) A-I      intronic
chr9:34417324(-) A-I      intronic
chr9:34436094(-) A-I      intronic
chr9:34450581(-) A-I      intronic
chr9:34411334(-) A-I      intronic
chr9:34430745(-) A-I      intronic
chr9:34431652(-) A-I      intronic
chr9:34417183(-) A-I      intronic
chr9:34418978(-) A-I      intronic
chr9:34425007(-) A-I      intronic
chr9:34431651(-) A-I      intronic
chr9:34450189(-) A-I      intronic
chr9:34450554(-) A-I      intronic
chr9:34432971(-) A-I      intronic
chr9:34415106(-) A-I      intronic
chr9:34441820(-) A-I      intronic
chr9:34450139(-) A-I      intronic
chr9:34450275(-) A-I      intronic
chr9:34456096(-) A-I      intronic
chr9:34416928(-) A-I      intronic
chr9:34450686(-) A-I      intronic
chr9:34416940(-) A-I      intronic
chr9:34436006(-) A-I      intronic
chr9:34449081(-) A-I      intronic
chr9:34448102(-) A-I      intronic
chr9:34455589(-) A-I      intronic
chr9:34442480(-) A-I      intronic
chr9:34450211(-) A-I      intronic
chr9:34425261(-) A-I      intronic
chr9:34434896(-) A-I      intronic
chr9:34411387(-) A-I      intronic
chr9:34441004(-) A-I      intronic
chr9:34449075(-) A-I      intronic
chr9:34430451(-) A-I      intronic
chr9:34419046(-) A-I      intronic
chr9:34430471(-) A-I      intronic
chr9:34455647(-) A-I      intronic
chr9:34436523(-) A-I      intronic
chr9:34406874(-) A-I      intronic
chr9:34416946(-) A-I      intronic
chr9:34431655(-) A-I      intronic
chr9:34450599(-) A-I      intronic
chr9:34407071(-) A-I      intronic
chr9:34448030(-) A-I      intronic
chr9:34430307(-) A-I      intronic
chr9:34411297(-) A-I      intronic
chr9:34456169(-) A-I      intronic
chr9:34416087(-) A-I      intronic
chr9:34456160(-) A-I      intronic
chr9:34417147(-) A-I      intronic
chr9:34424941(-) A-I      intronic
chr9:34448136(-) A-I      intronic
chr9:34455576(-) A-I      intronic
chr9:34455503(-) A-I      intronic
chr9:34414985(-) A-I      intronic
chr9:34450066(-) A-I      intronic
chr9:34430801(-) A-I      intronic
chr9:34416918(-) A-I      intronic
chr9:34445969(-) A-I      intronic
chr9:34430454(-) A-I      intronic
chr9:34430292(-) A-I      intronic
chr9:34425234(-) A-I      intronic
chr9:34418949(-) A-I      intronic
chr9:34416986(-) A-I      intronic
chr9:34425330(-) A-I      intronic
chr9:34415073(-) A-I      intronic
chr9:34425312(-) A-I      intronic
chr9:34456019(-) A-I      intronic
chr9:34406873(-) A-I      intronic
chr9:34416937(-) A-I      intronic
chr9:34441804(-) A-I      intronic
chr9:34423084(-) A-I      intronic
chr9:34456128(-) A-I      intronic
chr9:34440835(-) A-I      intronic
chr9:34417209(-) A-I      intronic
chr9:34416899(-) A-I      intronic
chr9:34415089(-) A-I      intronic
chr9:34406939(-) A-I      intronic
chr9:34436517(-) A-I      intronic
chr9:34430764(-) A-I      intronic
chr9:34432991(-) A-I      intronic
chr9:34436519(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED FAM219A
chr9:34407071(-) A-I intron -    21960545
chr9:34407072(-) A-I intron -    21960545
chr9:34407094(-) A-I intron -    21960545
chr9:34431707(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FAM219A
chr9:34398576-34398577(-) m6A 3'UTR//intron       -
chr9:34398605-34398606(-) m6A 3'UTR//intron       -
chr9:34398671-34398672(-) m6A 3'UTR//intron       27773535
chr9:34398706-34398707(-) m6A 3'UTR//intron       27773535
chr9:34398772-34398773(-) m6A 3'UTR//intron       27773535
chr9:34398829-34398830(-) m6A 3'UTR//intron       24981863//27773535
chr9:34398860-34398861(-) m6A 3'UTR//intron       24981863//27773535
chr9:34398880-34398881(-) m6A 3'UTR//intron       24981863//27773535
chr9:34398896-34398897(-) m6A 3'UTR//intron       27773535
chr9:34398925-34398926(-) m6A 3'UTR//intron       27773535
chr9:34399004-34399005(-) m6A 3'UTR//intron       27773535
chr9:34399258-34399259(-) m6A 3'UTR//intron       24981863
chr9:34399302-34399303(-) m6A 3'UTR//intron       24981863
chr9:34399360-34399361(-) m6A 3'UTR//intron       24981863
chr9:34399374-34399375(-) m6A 3'UTR//intron       24981863
chr9:34399536-34399537(-) m6A 3'UTR//intron       24209618
chr9:34400570-34400571(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr9:34400651-34400652(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:34400700-34400701(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:34400765-34400766(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:34400771-34400772(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr9:34401016-34401017(-) m6A CDS//intron       24981863//27773535//27371828
chr9:34401040-34401041(-) m6A CDS       27773535//27371828
chr9:34401046-34401047(-) m6A CDS       27773535//27371828
chr9:34401100-34401101(-) m6A CDS       27773535
chr9:34402387-34402388(-) m6A CDS       27773535
chr9:34402706-34402707(-) m6A CDS       27773535
chr9:34402723-34402724(-) m6A CDS       27773535
chr9:34458427-34458428(-) m6A 5'UTR       24209618//24981863//27371828//27773536
chr9:34458506-34458507(-) m6A 5'UTR       24209618//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate FAM219A
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: LNC_001582
Interactor2: FAM219A

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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