Detail Information

Basic Information:


  VIRBase ID:  

HHID00095499

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_001061 STK26
miRBase
Accession/Entrez ID		 LNC_001061 51765
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - MASK//MST4

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase STK26
chrX:131157567-131157568(+) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chrX:131157596-131157597(+) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chrX:131188681-131188682(+) m6A CDS//intron       24284625//24981863
chrX:131188782-131188783(+) m6A CDS//intron       24981863
chrX:131188812-131188813(+) m6A CDS//intron       24981863
chrX:131203542-131203543(+) Tm CDS//intron       -
chrX:131205188-131205189(+) Gm CDS       -
chrX:131207100-131207101(+) m6A CDS       24981863
chrX:131208190-131208191(+) m6A 3'UTR       24284625//24981863
chrX:131208218-131208219(+) m6A 3'UTR       24284625//24981863
chrX:131208237-131208238(+) m6A 3'UTR       24284625//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate STK26
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: LNC_001061
Interactor2: STK26

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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