Detail Information

Basic Information:


  VIRBase ID:  

HHID00095490

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol LNC_001057 MRFAP1
miRBase
Accession/Entrez ID		 LNC_001057 93621
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - PAM14//PGR1

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MRFAP1
chr4:6642406-6642407(+) m6A 5'UTR       24284625//24209618//24981863//22608085
chr4:6642554-6642555(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr4:6642602-6642603(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773536//22575960//22608085
chr4:6642621-6642622(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773536//22575960//22608085
chr4:6642701-6642702(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr4:6642746-6642747(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr4:6642770-6642771(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr4:6642839-6642840(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr4:6643238-6643239(+) m6A exon//intron       -
chr4:6643248-6643249(+) m6A exon//intron       -
chr4:6643800-6643801(+) m6A 3'UTR//exon       24284625//24209618//27773535//22575960
chr4:6643827-6643828(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr4:6643918-6643919(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr4:6643923-6643924(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr4:6643961-6643962(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr4:6644015-6644016(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr4:6644034-6644035(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr4:6644121-6644122(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr4:6644151-6644152(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr4:6644220-6644221(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr4:6644236-6644237(+) Am 3'UTR//exon       -
chr4:6644281-6644282(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr4:6644295-6644296(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr4:6644302-6644303(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr4:6644307-6644308(+) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr4:6644368-6644369(+) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr4:6644392-6644393(+) m6A 3'UTR//exon       24284625//27773535//22575960//22608085
chr4:6644408-6644409(+) m6A 3'UTR//exon       24284625//27773535//22575960//22608085
chr4:6644418-6644419(+) m6A 3'UTR//exon       24284625//27773535//22608085
chr4:6644464-6644465(+) m6A 3'UTR       27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MRFAP1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Nucleolus K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: LNC_001057
Interactor2: MRFAP1

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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