Detail Information

Basic Information:


  VIRBase ID:  

HHID00095299

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol ENST00000630823.2 CASK
miRBase
Accession/Entrez ID		 ENST00000630823.2 8573
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - CAGH39//CAMGUK//CMG//FGS4//hCASK//LIN2//MICPCH//MRXSNA//TNRC8

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CASK
chrX:41465204(-) A-I      intronic
chrX:41464820(-) A-I      intronic
chrX:41457834(-) A-I      intronic
chrX:41451312(-) A-I      intronic
chrX:41451269(-) A-I      intronic
chrX:41451001(-) A-I      intronic
chrX:41451000(-) A-I      intronic
chrX:41450950(-) A-I      intronic
chrX:41450892(-) A-I      intronic
chrX:41449700(-) A-I      intronic
chrX:41440581(-) A-I      intronic
chrX:41440522(-) A-I      intronic
chrX:41440510(-) A-I      intronic
chrX:41440502(-) A-I      intronic
chrX:41440428(-) A-I      intronic
chrX:41429566(-) A-I      intronic
chrX:41428240(-) A-I      intronic
chrX:41428129(-) A-I      intronic
chrX:41419690(-) A-I      intronic
chrX:41419678(-) A-I      intronic
chrX:41419677(-) A-I      intronic
chrX:41411469(-) A-I      intronic
chrX:41411094(-) A-I      intronic
chrX:41411050(-) A-I      intronic
chrX:41411049(-) A-I      intronic
chrX:41411046(-) A-I      intronic
chrX:41409939(-) A-I      intronic
chrX:41409932(-) A-I      intronic
chrX:41409314(-) A-I      intronic
chrX:41409162(-) A-I      intronic
chrX:41405328(-) A-I      intronic
chrX:41405151(-) A-I      intronic
chrX:41404526(-) A-I      intronic
chrX:41404500(-) A-I      intronic
chrX:41404128(-) A-I      intronic
chrX:41404032(-) A-I      intronic
chrX:41403916(-) A-I      intronic
chrX:41403813(-) A-I      intronic
chrX:41403788(-) A-I      intronic
chrX:41403756(-) A-I      intronic
chrX:41403695(-) A-I      intronic
chrX:41751324(-) A-I      intronic
chrX:41403602(-) A-I      intronic
chrX:41751683(-) A-I      intronic
chrX:41760021(-) A-I      intronic
chrX:41760071(-) A-I      intronic
chrX:41760077(-) A-I      intronic
chrX:41760095(-) A-I      intronic
chrX:41760096(-) A-I      intronic
chrX:41760176(-) A-I      intronic
chrX:41760181(-) A-I      intronic
chrX:41760657(-) A-I      intronic
chrX:41760688(-) A-I      intronic
chrX:41760734(-) A-I      intronic
chrX:41768915(-) A-I      intronic
chrX:41769132(-) A-I      intronic
chrX:41769133(-) A-I      intronic
chrX:41564767(-) A-I      intronic
chrX:41547172(-) A-I      intronic
chrX:41403719(-) A-I      intronic
chrX:41533827(-) A-I      intronic
chrX:41533822(-) A-I      intronic
chrX:41533800(-) A-I      intronic
chrX:41410976(-) A-I      intronic
chrX:41410978(-) A-I      intronic
chrX:41411005(-) A-I      intronic
chrX:41411047(-) A-I      intronic
chrX:41585197(-) A-I      intronic
chrX:41585207(-) A-I      intronic
chrX:41585233(-) A-I      intronic
chrX:41585265(-) A-I      intronic
chrX:41592307(-) A-I      intronic
chrX:41760539(-) A-I      intronic
chrX:41760565(-) A-I      intronic
chrX:41628524(-) A-I      intronic
chrX:41629115(-) A-I      intronic
chrX:41468640(-) A-I      intronic
chrX:41533798(-) A-I      intronic
chrX:41533784(-) A-I      intronic
chrX:41544937(-) A-I      intronic
chrX:41544863(-) A-I      intronic
chrX:41544832(-) A-I      intronic
chrX:41544807(-) A-I      intronic
chrX:41541948(-) A-I      intronic
chrX:41541706(-) A-I      intronic
chrX:41541697(-) A-I      intronic
chrX:41541658(-) A-I      intronic
chrX:41541640(-) A-I      intronic
chrX:41541603(-) A-I      intronic
chrX:41541601(-) A-I      intronic
chrX:41541588(-) A-I      intronic
chrX:41541558(-) A-I      intronic
chrX:41541549(-) A-I      intronic
chrX:41541543(-) A-I      intronic
chrX:41541136(-) A-I      intronic
chrX:41629141(-) A-I      intronic
chrX:41628589(-) A-I      intronic
chrX:41629146(-) A-I      intronic
chrX:41629812(-) A-I      intronic
chrX:41541123(-) A-I      intronic
chrX:41541087(-) A-I      intronic
chrX:41538273(-) A-I      intronic
chrX:41538265(-) A-I      intronic
chrX:41538258(-) A-I      intronic
chrX:41528006(-) A-I      intronic
chrX:41526936(-) A-I      intronic
chrX:41519069(-) A-I      intronic
chrX:41518729(-) A-I      intronic
chrX:41518716(-) A-I      intronic
chrX:41518714(-) A-I      intronic
chrX:41518713(-) A-I      intronic
chrX:41518679(-) A-I      intronic
chrX:41513904(-) A-I      intronic
chrX:41510803(-) A-I      intronic
chrX:41498506(-) A-I      intronic
chrX:41498465(-) A-I      intronic
chrX:41497698(-) A-I      intronic
chrX:41497694(-) A-I      intronic
chrX:41497639(-) A-I      intronic
chrX:41497633(-) A-I      intronic
chrX:41497583(-) A-I      intronic
chrX:41497180(-) A-I      intronic
chrX:41497178(-) A-I      intronic
chrX:41497091(-) A-I      intronic
chrX:41497085(-) A-I      intronic
chrX:41497053(-) A-I      intronic
chrX:41496851(-) A-I      intronic
chrX:41496749(-) A-I      intronic
chrX:41496488(-) A-I      intronic
chrX:41496352(-) A-I      intronic
chrX:41492196(-) A-I      intronic
chrX:41490674(-) A-I      intronic
chrX:41490666(-) A-I      intronic
chrX:41468872(-) A-I      intronic
chrX:41468641(-) A-I      intronic
chrX:41468547(-) A-I      intronic
chrX:41629888(-) A-I      intronic
chrX:41629921(-) A-I      intronic
chrX:41632070(-) A-I      intronic
chrX:41632081(-) A-I      intronic
chrX:41637621(-) A-I      intronic
chrX:41637659(-) A-I      intronic
chrX:41637660(-) A-I      intronic
chrX:41640046(-) A-I      intronic
chrX:41640048(-) A-I      intronic
chrX:41640265(-) A-I      intronic
chrX:41628000(-) A-I      intronic
chrX:41627964(-) A-I      intronic
chrX:41626057(-) A-I      intronic
chrX:41611817(-) A-I      intronic
chrX:41611800(-) A-I      intronic
chrX:41640291(-) A-I      intronic
chrX:41640296(-) A-I      intronic
chrX:41640441(-) A-I      intronic
chrX:41611742(-) A-I      intronic
chrX:41611731(-) A-I      intronic
chrX:41611151(-) A-I      intronic
chrX:41611131(-) A-I      intronic
chrX:41611125(-) A-I      intronic
chrX:41611117(-) A-I      intronic
chrX:41611079(-) A-I      intronic
chrX:41642739(-) A-I      intronic
chrX:41611076(-) A-I      intronic
chrX:41611062(-) A-I      intronic
chrX:41611053(-) A-I      intronic
chrX:41611052(-) A-I      intronic
chrX:41610574(-) A-I      intronic
chrX:41610541(-) A-I      intronic
chrX:41610537(-) A-I      intronic
chrX:41610459(-) A-I      intronic
chrX:41610451(-) A-I      intronic
chrX:41610438(-) A-I      intronic
chrX:41608935(-) A-I      intronic
chrX:41608912(-) A-I      intronic
chrX:41608430(-) A-I      intronic
chrX:41608423(-) A-I      intronic
chrX:41608418(-) A-I      intronic
chrX:41608383(-) A-I      intronic
chrX:41608281(-) A-I      intronic
chrX:41603870(-) A-I      intronic
chrX:41603869(-) A-I      intronic
chrX:41603798(-) A-I      intronic
chrX:41603737(-) A-I      intronic
chrX:41603281(-) A-I      intronic
chrX:41603263(-) A-I      intronic
chrX:41603215(-) A-I      intronic
chrX:41603169(-) A-I      intronic
chrX:41603094(-) A-I      intronic
chrX:41592427(-) A-I      intronic
chrX:41592385(-) A-I      intronic
chrX:41592360(-) A-I      intronic
chrX:41592353(-) A-I      intronic
chrX:41592342(-) A-I      intronic
chrX:41592317(-) A-I      intronic
chrX:41592312(-) A-I      intronic
chrX:41592305(-) A-I      intronic
chrX:41592128(-) A-I      intronic
chrX:41592076(-) A-I      intronic
chrX:41592036(-) A-I      intronic
chrX:41591261(-) A-I      intronic
chrX:41591253(-) A-I      intronic
chrX:41591248(-) A-I      intronic
chrX:41591232(-) A-I      intronic
chrX:41642740(-) A-I      intronic
chrX:41643886(-) A-I      intronic
chrX:41643945(-) A-I      intronic
chrX:41643946(-) A-I      intronic
chrX:41643949(-) A-I      intronic
chrX:41644017(-) A-I      intronic
chrX:41644107(-) A-I      intronic
chrX:41644506(-) A-I      intronic
chrX:41644511(-) A-I      intronic
chrX:41675394(-) A-I      intronic
chrX:41685764(-) A-I      intronic
chrX:41685830(-) A-I      intronic
chrX:41697355(-) A-I      intronic
chrX:41590578(-) A-I      intronic
chrX:41590573(-) A-I      intronic
chrX:41590565(-) A-I      intronic
chrX:41701704(-) A-I      intronic
chrX:41701744(-) A-I      intronic
chrX:41590456(-) A-I      intronic
chrX:41590209(-) A-I      intronic
chrX:41701763(-) A-I      intronic
chrX:41751180(-) A-I      intronic
chrX:41590171(-) A-I      intronic
chrX:41590134(-) A-I      intronic
chrX:41590078(-) A-I      intronic
chrX:41587948(-) A-I      intronic
chrX:41587840(-) A-I      intronic
chrX:41587825(-) A-I      intronic
chrX:41587817(-) A-I      intronic
chrX:41587752(-) A-I      intronic
chrX:41585347(-) A-I      intronic
chrX:41585243(-) A-I      intronic
chrX:41551080(-) A-I      intronic
chrX:41551050(-) A-I      intronic
chrX:41551012(-) A-I      intronic
chrX:41468546(-) A-I      intronic
chrX:41465797(-) A-I      intronic
chrX:41465778(-) A-I      intronic
chrX:41551008(-) A-I      intronic
chrX:41550855(-) A-I      intronic
chrX:41550214(-) A-I      intronic
chrX:41550193(-) A-I      intronic
chrX:41550102(-) A-I      intronic
chrX:41550065(-) A-I      intronic
chrX:41550043(-) A-I      intronic
chrX:41465205(-) A-I      intronic
chrX:41403675(-) A-I      intronic
chrX:41608819(-) A-I      intronic
chrX:41497573(-) A-I      intronic
chrX:41541104(-) A-I      intronic
chrX:41595504(-) A-I      intronic
chrX:41608495(-) A-I      intronic
chrX:41689452(-) A-I      intronic
chrX:41685885(-) A-I      intronic
chrX:41760187(-) A-I      intronic
chrX:41611105(-) A-I      intronic
chrX:41611177(-) A-I      intronic
chrX:41768961(-) A-I      intronic
chrX:41595556(-) A-I      intronic
chrX:41403707(-) A-I      intronic
chrX:41403653(-) A-I      intronic
chrX:41487659(-) A-I      intronic
chrX:41622658(-) A-I      intronic
chrX:41590623(-) A-I      intronic
chrX:41751682(-) A-I      intronic
chrX:41626099(-) A-I      intronic
chrX:41611707(-) A-I      intronic
chrX:41760137(-) A-I      intronic
chrX:41591278(-) A-I      intronic
chrX:41760250(-) A-I      intronic
chrX:41700890(-) A-I      intronic
chrX:41404357(-) A-I      intronic
chrX:41592179(-) A-I      intronic
chrX:41519152(-) A-I      intronic
chrX:41496910(-) A-I      intronic
chrX:41522309(-) A-I      intronic
chrX:41410906(-) A-I      intronic
chrX:41629804(-) A-I      intronic
chrX:41519158(-) A-I      intronic
chrX:41700860(-) A-I      intronic
chrX:41608843(-) A-I      intronic
chrX:41538278(-) A-I      intronic
chrX:41541634(-) A-I      intronic
chrX:41629777(-) A-I      intronic
chrX:41495212(-) A-I      intronic
chrX:41464757(-) A-I      intronic
chrX:41622804(-) A-I      intronic
chrX:41769038(-) A-I      intronic
chrX:41410982(-) A-I      intronic
chrX:41532610(-) A-I      intronic
chrX:41644046(-) A-I      intronic
chrX:41551303(-) A-I      intronic
chrX:41518592(-) A-I      intronic
chrX:41538272(-) A-I      intronic
chrX:41592346(-) A-I      intronic
chrX:41432329(-) A-I      intronic
chrX:41760738(-) A-I      intronic
chrX:41603316(-) A-I      intronic
chrX:41592081(-) A-I      intronic
chrX:41405405(-) A-I      intronic
chrX:41464646(-) A-I      intronic
chrX:41495192(-) A-I      intronic
chrX:41404071(-) A-I      intronic
chrX:41404511(-) A-I      intronic
chrX:41492283(-) A-I      intronic
chrX:41457774(-) A-I      intronic
chrX:41457189(-) A-I      intronic
chrX:41410040(-) A-I      intronic
chrX:41485045(-) A-I      intronic
chrX:41403757(-) A-I      intronic
chrX:41449503(-) A-I      intronic
chrX:41521916(-) A-I      intronic
chrX:41497676(-) A-I      intronic
chrX:41760549(-) A-I      intronic
chrX:41491246(-) A-I      intronic
chrX:41592148(-) A-I      intronic
chrX:41498575(-) A-I      intronic
chrX:41541643(-) A-I      intronic
chrX:41490743(-) A-I      intronic
chrX:41603311(-) A-I      intronic
chrX:41590557(-) A-I      intronic
chrX:41490999(-) A-I      intronic
chrX:41590200(-) A-I      intronic
chrX:41497116(-) A-I      intronic
chrX:41644029(-) A-I      intronic
chrX:41768996(-) A-I      intronic
chrX:41496846(-) A-I      intronic
chrX:41640465(-) A-I      intronic
chrX:41604464(-) A-I      intronic
chrX:41769068(-) A-I      intronic
chrX:41428187(-) A-I      intronic
chrX:41760571(-) A-I      intronic
chrX:41403812(-) A-I      intronic
chrX:41613017(-) A-I      intronic
chrX:41771931(-) A-I      intronic
chrX:41403733(-) A-I      intronic
chrX:41611647(-) A-I      intronic
chrX:41541113(-) A-I      intronic
chrX:41411397(-) A-I      intronic
chrX:41608812(-) A-I      intronic
chrX:41492184(-) A-I      intronic
chrX:41541723(-) A-I      intronic
chrX:41760622(-) A-I      intronic
chrX:41442782(-) A-I      intronic
chrX:41644320(-) A-I      intronic
chrX:41751814(-) A-I      intronic
chrX:41541684(-) A-I      intronic
chrX:41769392(-) A-I      intronic
chrX:41493294(-) A-I      intronic
chrX:41592059(-) A-I      intronic
chrX:41626018(-) A-I      intronic
chrX:41760550(-) A-I      intronic
chrX:41557253(-) A-I      intronic
chrX:41760249(-) A-I      intronic
chrX:41603195(-) A-I      intronic
chrX:41409893(-) A-I      intronic
chrX:41410157(-) A-I      intronic
chrX:41445237(-) A-I      intronic
chrX:41603198(-) A-I      intronic
chrX:41611780(-) A-I      intronic
chrX:41541720(-) A-I      intronic
chrX:41541139(-) A-I      intronic
chrX:41628527(-) A-I      intronic
chrX:41590616(-) A-I      intronic
chrX:41403918(-) A-I      intronic
chrX:41406353(-) A-I      intronic
chrX:41628608(-) A-I      intronic
chrX:41428783(-) A-I      intronic
chrX:41405859(-) A-I      intronic
chrX:41545764(-) A-I      intronic
chrX:41771833(-) A-I      intronic
chrX:41497035(-) A-I      intronic
chrX:41608803(-) A-I      intronic
chrX:41518752(-) A-I      intronic
chrX:41485044(-) A-I      intronic
chrX:41649218(-) A-I      intronic
chrX:41769212(-) A-I      intronic
chrX:41608913(-) A-I      intronic
chrX:41487777(-) A-I      intronic
chrX:41651742(-) A-I      intronic
chrX:41771933(-) A-I      intronic
chrX:41612976(-) A-I      intronic
chrX:41590120(-) A-I      intronic
chrX:41592420(-) A-I      intronic
chrX:41628597(-) A-I      intronic
chrX:41636662(-) A-I      intronic
chrX:41544030(-) A-I      intronic
chrX:41510831(-) A-I      intronic
chrX:41769139(-) A-I      intronic
chrX:41409970(-) A-I      intronic
chrX:41613011(-) A-I      intronic
chrX:41685841(-) A-I      intronic
chrX:41451443(-) A-I      intronic
chrX:41590490(-) A-I      intronic
chrX:41603287(-) A-I      intronic
chrX:41590152(-) A-I      intronic
chrX:41760529(-) A-I      intronic
chrX:41628609(-) A-I      intronic
chrX:41497658(-) A-I      intronic
chrX:41464633(-) A-I      intronic
chrX:41405190(-) A-I      intronic
chrX:41611646(-) A-I      intronic
chrX:41541976(-) A-I      intronic
chrX:41519153(-) A-I      intronic
chrX:41769461(-) A-I      intronic
chrX:41405875(-) A-I      intronic
chrX:41496821(-) A-I      intronic
chrX:41492265(-) A-I      intronic
chrX:41610635(-) A-I      intronic
chrX:41604382(-) A-I      intronic
chrX:41590080(-) A-I      intronic
chrX:41497794(-) A-I      intronic
chrX:41760538(-) A-I      intronic
chrX:41628647(-) A-I      intronic
chrX:41521983(-) A-I      intronic
chrX:41590067(-) A-I      intronic
chrX:41644398(-) A-I      intronic
chrX:41495178(-) A-I      intronic
chrX:41631347(-) A-I      intronic
chrX:41651799(-) A-I      intronic
chrX:41445246(-) A-I      intronic
chrX:41608783(-) A-I      intronic
chrX:41590181(-) A-I      intronic
chrX:41496383(-) A-I      intronic
chrX:41629684(-) A-I      intronic
chrX:41592479(-) A-I      intronic
chrX:41541633(-) A-I      intronic
chrX:41406322(-) A-I      intronic
chrX:41760600(-) A-I      intronic
chrX:41590170(-) A-I      intronic
chrX:41496388(-) A-I      intronic
chrX:41551017(-) A-I      intronic
chrX:41592066(-) A-I      intronic
chrX:41439666(-) A-I      intronic
chrX:41428784(-) A-I      intronic
chrX:41769393(-) A-I      intronic
chrX:41651755(-) A-I      intronic
chrX:41487837(-) A-I      intronic
chrX:41464653(-) A-I      intronic
chrX:41595530(-) A-I      intronic
chrX:41493179(-) A-I      intronic
chrX:41541980(-) A-I      intronic
chrX:41410980(-) A-I      intronic
chrX:41551307(-) A-I      intronic
chrX:41405407(-) A-I      intronic
chrX:41625974(-) A-I      intronic
chrX:41541694(-) A-I      intronic
chrX:41591156(-) A-I      intronic
chrX:41592366(-) A-I      intronic
chrX:41590470(-) A-I      intronic
chrX:41592112(-) A-I      intronic
chrX:41591109(-) A-I      intronic
chrX:41411277(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CASK
chrX:41760187(-) A-I intron -    22327324
chrX:41703162(-) A-G intron -    22484847
chrX:41405407(-) A-G intron -    22484847
chrX:41541585(-) A-G intron -    22484847
chrX:41542025(-) A-G intron -    22484847
chrX:41604464(-) A-G intron -    22484847
chrX:41760538(-) A-G intron -    22484847
chrX:41760549(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CASK
chrX:41375192-41375193(-) m6A 3'UTR       24981863
chrX:41375238-41375239(-) m6A 3'UTR       24981863//27773535
chrX:41375252-41375253(-) m6A 3'UTR       24981863//27773535
chrX:41379741-41379742(-) m6A CDS       26404942
chrX:41379749-41379750(-) m6A CDS       26404942
chrX:41379800-41379801(-) m6A CDS       26404942
chrX:41390383-41390384(-) m6A CDS       24981863
chrX:41390451-41390452(-) m6A CDS       24981863
chrX:41393981-41393982(-) m6A CDS       24981863
chrX:41394005-41394006(-) m6A CDS       24981863
chrX:41394016-41394017(-) m6A CDS       24981863
chrX:41394160-41394161(-) m6A CDS       24981863
chrX:41414854-41414855(-) Cm CDS//exon//intron       -
chrX:41534175-41534176(-) Y intron       25219674
chrX:41535522-41535523(-) m6A intron       24981863
chrX:41535549-41535550(-) m6A intron       24981863
chrX:41782192-41782193(-) Gm CDS//exon       -
chrX:41782615-41782616(-) m6A 5'UTR       24209618//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CASK
Cytosol K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ENST00000630823.2
Interactor2: CASK

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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