Detail Information

Basic Information:


  VIRBase ID:  

HHID00095255

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol ENST00000432070.2 FLII
miRBase
Accession/Entrez ID		 ENST00000432070.2 2314
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - FLI//Fli1//FLIL

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FLII
chr17:18159486(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FLII
chr17:18148449-18148450(-) m6A 3'UTR//CDS       22575960
chr17:18149074-18149075(-) m6A 3'UTR//CDS//exon//intron       27773535
chr17:18149135-18149136(-) m6A 3'UTR//CDS//exon//intron       27773535
chr17:18149180-18149181(-) m6A exon//intron       27773535//27773536
chr17:18149278-18149279(-) m6A 3'UTR//CDS//exon//intron       27773535//27773536
chr17:18149287-18149288(-) m6A 3'UTR//CDS//exon//intron       27773535//27773536
chr17:18149314-18149315(-) m6A 3'UTR//CDS//exon//intron       27773535//27773536
chr17:18149356-18149357(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535//27773536
chr17:18149441-18149442(-) m6A exon//intron       24284625//27773535//27773536
chr17:18149450-18149451(-) m6A exon//intron       24284625//27773535//27773536
chr17:18149747-18149748(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535//27371828//27773536
chr17:18150022-18150023(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr17:18150097-18150098(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr17:18150247-18150248(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//27773535//27371828//27773536//22575960
chr17:18150334-18150335(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//27773535//27371828//27773536//22575960
chr17:18150398-18150399(-) m6A exon//intron       24284625//24209618//27371828//27773536//22575960
chr17:18150546-18150547(-) m6A 3'UTR//CDS//exon//intron       24209618//27773536//22575960
chr17:18150624-18150625(-) m6A 3'UTR//CDS//exon//intron       27773535//27773536//22575960
chr17:18151121-18151122(-) m6A 3'UTR//CDS//exon//intron       22575960
chr17:18151145-18151146(-) m6A 3'UTR//CDS//exon//intron       22575960
chr17:18151287-18151288(-) m6A 3'UTR//CDS//exon//intron       22575960
chr17:18151894-18151895(-) m6A 3'UTR//CDS//exon//intron       27773535
chr17:18151919-18151920(-) Gm 3'UTR//CDS//exon//intron       -
chr17:18152167-18152168(-) m6A 3'UTR//CDS//intron       22575960
chr17:18152179-18152180(-) m6A 3'UTR//CDS//intron       22575960
chr17:18152446-18152447(-) m6A 3'UTR//CDS//exon//intron       22575960
chr17:18152456-18152457(-) m6A 3'UTR//CDS//exon//intron       22575960
chr17:18152488-18152489(-) m6A 3'UTR//CDS//exon//intron       22575960
chr17:18152657-18152658(-) m6A 3'UTR//CDS//exon//intron       22575960
chr17:18152685-18152686(-) m6A 3'UTR//CDS//exon//intron       22575960
chr17:18154651-18154652(-) m6A 3'UTR//CDS//exon//intron       27371828
chr17:18154674-18154675(-) m6A 3'UTR//CDS//exon//intron       27371828
chr17:18154744-18154745(-) m6A 3'UTR//CDS//exon//intron       24981863//27371828//27773536
chr17:18154998-18154999(-) Cm 3'UTR//CDS//exon//intron       -
chr17:18155006-18155007(-) m6A 3'UTR//CDS//exon//intron       24981863//27371828//27773536//22575960
chr17:18155111-18155112(-) m6A 3'UTR//CDS//exon//intron       27371828//27773536//22575960
chr17:18155365-18155366(-) m6A 3'UTR//CDS//exon//intron       27371828//27773536
chr17:18155407-18155408(-) m6A 3'UTR//CDS//exon//intron       27371828//27773536//22575960
chr17:18155440-18155441(-) m6A 3'UTR//CDS//exon//intron       27371828//27773536//22575960
chr17:18155834-18155835(-) m6A 3'UTR//CDS//exon//intron       27371828//27773536//22575960
chr17:18155840-18155841(-) m6A 3'UTR//CDS//exon//intron       27371828//27773536//22575960
chr17:18155851-18155852(-) m6A 3'UTR//CDS//exon//intron       27371828//27773536//22575960
chr17:18156713-18156714(-) m6A 3'UTR//CDS//exon//intron       26404942//27371828
chr17:18156888-18156889(-) m6A 3'UTR//CDS//exon//intron       27773535
chr17:18156895-18156896(-) m6A 3'UTR//CDS//exon//intron       27773535
chr17:18156915-18156916(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535//27773536//22575960
chr17:18157212-18157213(-) m6A exon//intron       24981863
chr17:18157467-18157468(-) m6A 3'UTR//CDS//exon       24284625//27773536//22575960
chr17:18157858-18157859(-) m6A 3'UTR//CDS//exon//intron       24284625//27773536//22575960
chr17:18157927-18157928(-) m6A 3'UTR//CDS//exon//intron       24284625//26404942//27773535//27773536//22575960
chr17:18157939-18157940(-) m6A 3'UTR//CDS//exon//intron       26404942//27773535//27371828//27773536//22575960
chr17:18158097-18158098(-) m6A 3'UTR//CDS//exon       26404942//27773535//27371828//27773536
chr17:18158112-18158113(-) m6A 3'UTR//CDS//exon       27773535//27371828//27773536
chr17:18159908-18159909(-) m6A 3'UTR//CDS//exon       24284625//27371828//27773536
chr17:18159956-18159957(-) m6A exon//intron       24284625//27371828//27773536
chr17:18159963-18159964(-) m6A exon//intron       24284625//27371828//27773536
chr17:18160127-18160128(-) m6A exon//intron       -
chr17:18160148-18160149(-) m6A exon//intron       -
chr17:18160274-18160275(-) m6A 3'UTR//CDS//exon       24284625//27773536//22575960
chr17:18161963-18161964(-) m6A CDS//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate FLII
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: ENST00000432070.2
Interactor2: FLII

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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