Detail Information

Basic Information:


  VIRBase ID:  

HHID00095254

  Virus:  

Human immunodeficiency virus (HIV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol ENST00000432070.2 CNN2
miRBase
Accession/Entrez ID		 ENST00000432070.2 1265
Organism Homo sapiens Homo sapiens
Category lncRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CNN2
chr19:1030371(+) A-I      intronic
chr19:1030401(+) A-I      intronic
chr19:1033361(+) A-I      intronic
chr19:1033445(+) A-I      intronic
chr19:1035745(+) A-I      intronic
chr19:1035721(+) A-I      intronic
chr19:1033432(+) A-I      intronic
chr19:1035763(+) A-I      intronic
chr19:1033406(+) A-I      intronic
chr19:1029754(+) A-I      intronic
chr19:1033363(+) A-I      intronic
chr19:1030504(+) A-I      intronic
chr19:1029803(+) A-I      intronic
chr19:1032080(+) A-I      intronic
chr19:1032833(+) A-I      intronic
chr19:1033488(+) A-I      intronic
chr19:1032917(+) A-I      intronic
chr19:1032145(+) A-I      intronic
chr19:1032828(+) A-I      intronic
chr19:1035876(+) A-I      intronic
chr19:1035801(+) A-I      intronic
chr19:1035774(+) A-I      intronic
chr19:1035712(+) A-I      intronic
chr19:1035707(+) A-I      intronic
chr19:1029959(+) A-I      intronic
chr19:1033441(+) A-I      intronic
chr19:1033346(+) A-I      intronic
chr19:1033340(+) A-I      intronic
chr19:1029824(+) A-I      intronic
chr19:1032852(+) A-I      intronic
chr19:1032865(+) A-I      intronic
chr19:1033267(+) A-I      intronic
chr19:1033061(+) A-I      intronic
chr19:1033054(+) A-I      intronic
chr19:1032987(+) A-I      intronic
chr19:1032978(+) A-I      intronic
chr19:1032952(+) A-I      intronic
chr19:1032944(+) A-I      intronic
chr19:1032943(+) A-I      intronic
chr19:1032878(+) A-I      intronic
chr19:1032877(+) A-I      intronic
chr19:1029840(+) A-I      intronic
chr19:1029816(+) A-I      intronic
chr19:1029724(+) A-I      intronic
chr19:1033388(+) A-I      intronic
chr19:1032847(+) A-I      intronic
chr19:1033365(+) A-I      intronic
chr19:1033261(+) A-I      intronic
chr19:1035702(+) A-I      intronic
chr19:1033318(+) A-I      intronic
chr19:1033479(+) A-I      intronic
chr19:1032857(+) A-I      intronic
chr19:1035842(+) A-I      intronic
chr19:1033356(+) A-I      intronic
chr19:1035760(+) A-I      intronic
chr19:1032017(+) A-I      intronic
chr19:1029719(+) A-I      intronic
chr19:1033364(+) A-I      intronic
chr19:1035806(+) A-I      intronic
chr19:1031877(+) A-I      intronic
chr19:1032790(+) A-I      intronic
chr19:1033341(+) A-I      intronic
chr19:1037384(+) A-I      intronic
chr19:1033449(+) A-I      intronic
chr19:1029981(+) A-I      intronic
chr19:1032842(+) A-I      intronic
chr19:1032834(+) A-I      intronic
chr19:1033321(+) A-I      intronic
chr19:1033397(+) A-I      intronic
chr19:1033431(+) A-I      intronic
chr19:1033457(+) A-I      intronic
chr19:1029720(+) A-I      intronic
chr19:1029828(+) A-I      intronic
chr19:1035666(+) A-I      intronic
chr19:1033012(+) A-I      intronic
chr19:1032797(+) A-I      intronic
chr19:1030570(+) A-I      intronic
chr19:1029878(+) A-I      intronic
chr19:1030376(+) A-I      intronic
chr19:1029848(+) A-I      intronic
chr19:1032809(+) A-I      intronic
chr19:1029960(+) A-I      intronic
chr19:1029873(+) A-I      intronic
chr19:1029773(+) A-I      intronic
chr19:1029838(+) A-I      intronic
chr19:1033307(+) A-I      intronic
chr19:1035759(+) A-I      intronic
chr19:1032100(+) A-I      intronic
chr19:1037271(+) A-I      intronic
chr19:1032817(+) A-I      intronic
chr19:1033424(+) A-I      intronic
chr19:1033000(+) A-I      intronic
chr19:1033480(+) A-I      intronic
chr19:1030468(+) A-I      intronic
chr19:1033339(+) A-I      intronic
chr19:1035723(+) A-I      intronic
chr19:1032919(+) A-I      intronic
chr19:1029799(+) A-I      intronic
chr19:1035765(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CNN2
chr19:1032834(+) A-I intron -    22327324
chr19:1033255(+) A-I intron -    22327324
chr19:1033449(+) A-I intron -    22327324
chr19:1033457(+) A-I intron -    22327324
chr19:1035216(+) A-I intron -    22327324
chr19:1029799(+) A-G intron -    22484847
chr19:1029838(+) A-G intron -    22484847
chr19:1029878(+) A-G intron -    22484847
chr19:1029898(+) A-G intron -    22484847
chr19:1032834(+) A-G intron -    22484847
chr19:1032842(+) A-G intron -    22484847
chr19:1032857(+) A-G intron -    22484847
chr19:1033058(+) A-G intron -    22484847
chr19:1033341(+) A-G intron -    22484847
chr19:1033356(+) A-G intron -    22484847
chr19:1033449(+) A-G intron -    22484847
chr19:1033457(+) A-G intron -    22484847
chr19:1033487(+) A-G intron -    22484847
chr19:1035646(+) G-A intron -    22484847
chr19:1035667(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CNN2
chr19:1026718-1026719(+) m6A 5'UTR//CDS       24284625
chr19:1027017-1027018(+) m6A 5'UTR//intron       24284625
chr19:1032398-1032399(+) m6A CDS//intron       22575960
chr19:1032446-1032447(+) m6A CDS//intron       22575960
chr19:1032564-1032565(+) m6A CDS//intron       22575960
chr19:1032606-1032607(+) m6A CDS//intron       22575960
chr19:1032615-1032616(+) m6A CDS//intron       22575960
chr19:1032651-1032652(+) m6A CDS//intron       22575960
chr19:1036134-1036135(+) m6A CDS//intron       22575960
chr19:1036159-1036160(+) m6A CDS//intron       22575960
chr19:1036490-1036491(+) m6A CDS//intron       -
chr19:1036511-1036512(+) m6A CDS//intron       -
chr19:1036544-1036545(+) m6A CDS//intron       -
chr19:1036992-1036993(+) m6A CDS//exon//intron       24209618
chr19:1037843-1037844(+) m6A 3'UTR//CDS//exon       22575960
chr19:1038178-1038179(+) m1A 3'UTR//exon       26863410
chr19:1038381-1038382(+) m6A 3'UTR//exon       26404942//22575960
chr19:1038435-1038436(+) m6A 3'UTR//exon       26404942//22575960
chr19:1038443-1038444(+) m6A 3'UTR//exon       24209618//22575960
chr19:1038451-1038452(+) m6A 3'UTR//exon       24209618//22575960
chr19:1038458-1038459(+) m6A 3'UTR//exon       24209618//22575960
chr19:1038466-1038467(+) m6A 3'UTR//exon       24209618//22575960
chr19:1038708-1038709(+) m6A 3'UTR//exon       24209618
chr19:1038792-1038793(+) m6A 3'UTR//exon       24209618
chr19:1038978-1038979(+) m6A 3'UTR//exon       24284625//24981863//27773535
chr19:1038994-1038995(+) m6A 3'UTR//exon       24284625//24981863//27773535
chr19:1039030-1039031(+) m6A 3'UTR//exon       24284625//24981863//27773535
chr19:1039045-1039046(+) m6A 3'UTR//exon       24284625//24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CNN2
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ENST00000432070.2
Interactor2: CNN2

Evidence Support:


Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 32341894 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line CD4 T cells Interactor2 expression None
Description Based on previous DE analysis, 1109 DE lncRNAs targeting DE mRNAs were identified In all correlations (Table S6).

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