Detail Information

Basic Information:


  VIRBase ID:  

HHID00093567

  Virus:  

Senecavirus A

  Host:  

Sus scrofa

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol ssc-miR-7139-3p NCOA7
miRBase
Accession/Entrez ID		 MIMAT0028154 100157226
Organism Sus scrofa Sus scrofa
Category miRNA mRNA
Alias - -

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NCOA7
chr1:40817658-40817659(-) m6A CDS       28267806
chr1:40817673-40817674(-) m6A CDS       28267806
chr1:40818106-40818107(-) m6A CDS       28267806
chr1:40863382-40863383(-) m6A CDS       28267806
chr1:40863453-40863454(-) m6A CDS       28267806
chr1:40863523-40863524(-) m6A CDS       28267806
chr1:40863534-40863535(-) m6A CDS       28267806
chr1:40863560-40863561(-) m6A CDS       28267806
chr1:40863588-40863589(-) m6A CDS       28267806
chr1:40863597-40863598(-) m6A CDS       28267806
chr1:40863633-40863634(-) m6A CDS       28267806
chr1:40863667-40863668(-) m6A CDS       28267806
chr1:40863692-40863693(-) m6A CDS       28267806
chr1:40863709-40863710(-) m6A CDS       28267806
chr1:40863742-40863743(-) m6A CDS       28267806
chr1:40863770-40863771(-) m6A CDS       28267806
chr1:40863826-40863827(-) m6A CDS       28267806
chr1:40863831-40863832(-) m6A CDS       28267806
chr1:40863847-40863848(-) m6A CDS       28267806
chr1:40863860-40863861(-) m6A CDS       28267806

Interaction Network (The top 100 interactions):


Interactor1: ssc-miR-7139-3p
Interactor2: NCOA7

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence miRanda
Support Database ViRBase

References:


PMID 32605750 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description We used the miRanda software to predict miRNAs that bind to both differentially expressed lncRNAs and mRNAs.

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