Detail Information

Basic Information:


  VIRBase ID:  

HHID00092787

  Virus:  

Influenza A virus (A/Brisbane/10/2007(H3N2))

  Host:  

Homo sapiens

  Confidence Score:  

0.6743

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1915-3p:           TNFRSF10A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1915-3p TNFRSF10A
miRBase
Accession/Entrez ID		 MIMAT0007892 8797
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - APO2//CD261//DR4//TRAILR-1//TRAILR1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1915-3p
rs1319660164 chr10:21496576    C/T
rs1335396985 chr10:21496581    C/G
rs1359100620 chr10:21496582    G/A
rs1416262346 chr10:21496578    C/A
rs540277336 chr10:21496579    G/A
rs540277336 chr10:21496579    G/C
rs983068182 chr10:21496591    T/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TNFRSF10A
chr8:23078808(-) A-I      intronic
chr8:23053845(-) A-I      intronic
chr8:23053737(-) A-I      intronic
chr8:23071132(-) A-I      intronic
chr8:23052563(-) A-I      intronic
chr8:23052509(-) A-I      intronic
chr8:23052658(-) A-I      intronic
chr8:23052469(-) A-I      intronic
chr8:23078764(-) A-I      intronic
chr8:23078032(-) A-I      intronic
chr8:23052585(-) A-I      intronic
chr8:23078721(-) A-I      intronic
chr8:23052489(-) A-I      intronic
chr8:23078030(-) A-I      intronic
chr8:23078026(-) A-I      intronic
chr8:23077864(-) A-I      intronic
chr8:23058729(-) A-I      intronic
chr8:23052615(-) A-I      intronic
chr8:23071141(-) A-I      intronic
chr8:23080851(-) A-I      intronic
chr8:23071140(-) A-I      intronic
chr8:23071099(-) A-I      intronic
chr8:23061368(-) A-I      intronic
chr8:23061362(-) A-I      intronic
chr8:23061358(-) A-I      intronic
chr8:23061352(-) A-I      intronic
chr8:23078873(-) A-I      intronic
chr8:23078847(-) A-I      intronic
chr8:23078809(-) A-I      intronic
chr8:23071186(-) A-I      intronic
chr8:23071229(-) A-I      intronic
chr8:23071230(-) A-I      intronic
chr8:23071620(-) A-I      intronic
chr8:23071835(-) A-I      intronic
chr8:23071863(-) A-I      intronic
chr8:23072786(-) A-I      intronic
chr8:23072787(-) A-I      intronic
chr8:23072837(-) A-I      intronic
chr8:23073424(-) A-I      intronic
chr8:23073428(-) A-I      intronic
chr8:23073447(-) A-I      intronic
chr8:23074092(-) A-I      intronic
chr8:23080641(-) A-I      intronic
chr8:23080644(-) A-I      intronic
chr8:23081596(-) A-I      intronic
chr8:23081583(-) A-I      intronic
chr8:23080850(-) A-I      intronic
chr8:23080750(-) A-I      intronic
chr8:23048980(-) A-I      3'UTR
chr8:23049112(-) A-I      3'UTR
chr8:23049085(-) A-I      3'UTR
chr8:23048976(-) A-I      3'UTR
chr8:23048954(-) A-I      3'UTR
chr8:23049031(-) A-I      3'UTR
chr8:23048985(-) A-I      3'UTR
chr8:23048990(-) A-I      3'UTR
chr8:23049017(-) A-I      3'UTR
chr8:23048881(-) A-I      3'UTR
chr8:23048923(-) A-I      3'UTR
chr8:23048952(-) A-I      3'UTR
chr8:23049119(-) A-I      3'UTR
chr8:23049120(-) A-I      3'UTR
chr8:23048987(-) A-I      3'UTR
chr8:23048982(-) A-I      3'UTR
chr8:23048981(-) A-I      3'UTR
chr8:23048950(-) A-I      3'UTR
chr8:23049123(-) A-I      3'UTR
chr8:23049040(-) A-I      3'UTR
chr8:23072785(-) A-I      intronic
chr8:23071879(-) A-I      intronic
chr8:23071125(-) A-I      intronic
chr8:23071136(-) A-I      intronic
chr8:23071179(-) A-I      intronic
chr8:23073604(-) A-I      intronic
chr8:23048940(-) A-I      3'UTR
chr8:23048914(-) A-I      3'UTR
chr8:23048893(-) A-I      3'UTR
chr8:23074867(-) A-I      intronic
chr8:23074083(-) A-I      intronic
chr8:23073603(-) A-I      intronic
chr8:23074143(-) A-I      intronic
chr8:23080873(-) A-I      intronic
chr8:23052589(-) A-I      intronic
chr8:23081730(-) A-I      intronic
chr8:23071117(-) A-I      intronic
chr8:23071162(-) A-I      intronic
chr8:23081766(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TNFRSF10A
chr8:23074923(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TNFRSF10A
chr8:23048063-23048064(-) m6A 3'UTR       27773535
chr8:23048176-23048177(-) m6A 3'UTR       24284625//24981863//27773535
chr8:23048268-23048269(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22575960
chr8:23048374-23048375(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960
chr8:23048428-23048429(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22575960
chr8:23048458-23048459(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22575960
chr8:23048476-23048477(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22575960
chr8:23048523-23048524(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22575960
chr8:23048546-23048547(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22575960
chr8:23048581-23048582(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//27371828//22575960
chr8:23048595-23048596(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//27371828//22575960
chr8:23048657-23048658(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//27371828//22575960
chr8:23048682-23048683(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//27371828//22575960
chr8:23048691-23048692(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//27371828//22575960
chr8:23048820-23048821(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960
chr8:23048847-23048848(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960
chr8:23048859-23048860(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960
chr8:23048907-23048908(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960
chr8:23049028-23049029(-) m6A 3'UTR       24284625//24981863//27773535
chr8:23049202-23049203(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535
chr8:23049264-23049265(-) m6A CDS       24284625//25456834//24981863//26404942//27773535//27371828//22575960
chr8:23049276-23049277(-) m6A CDS       24284625//25456834//24981863//26404942//27773535//27371828//22575960
chr8:23049299-23049300(-) m6A CDS       24284625//25456834//24981863//26404942//27773535//27371828//22575960
chr8:23049358-23049359(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//27371828//22575960
chr8:23049450-23049451(-) m6A CDS//exon       24284625//27773535//22575960
chr8:23049471-23049472(-) m6A CDS//exon       24284625//27773535//22575960
chr8:23049495-23049496(-) m6A CDS//exon       24284625//27773535
chr8:23058105-23058106(-) m6A CDS       24284625
chr8:23059369-23059370(-) m6A 5'UTR//CDS       24284625//22575960
chr8:23059376-23059377(-) m6A 5'UTR//CDS       24284625//22575960
chr8:23059395-23059396(-) m6A 5'UTR//CDS       24284625//22575960
chr8:23082349-23082350(-) m6A CDS//intron       24284625//25456834//27773536
chr8:23082385-23082386(-) m6A CDS//intron       24284625//25456834//27371828//27773536
chr8:23082394-23082395(-) m6A CDS//intron       24284625//25456834//27371828//27773536
chr8:23082436-23082437(-) m6A CDS//intron       24981863//27371828//27773536
chr8:23082495-23082496(-) m6A CDS//intron       24284625//24981863//26404942//27773535//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1915-3p
Exosome Pooled sera     27278097
Exosome Breast cancer cell line (MCF-7)     20976003
Exosome Breast cancer cell lines (MCF-7|MDA-MB-231)     24468161
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
TNFRSF10A
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1915-3p
Interactor2: TNFRSF10A

Evidence Support:


Weak-Evidence MiRNA microarray//RNA-Seq
Prediction-Evidence microRNA.org//PITA//Targetscan
Support Database ViRBase

References:


PMID 30605755 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line A549 cells Interactor2 expression Upregulation
Description A. Relationships between miRNAs and inversely correlated mRNAs involved in the influenza A pathway.

Starting a new search, please wait ...