Detail Information

Basic Information:


  VIRBase ID:  

HHID00092725

  Virus:  

Influenza A virus (A/Brisbane/10/2007(H3N2))

  Host:  

Homo sapiens

  Confidence Score:  

0.6743

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-467-3p MYD88
miRBase
Accession/Entrez ID		 hsa-miR-467-3p 4615
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - IMD68//MYD88D

RNA Editing:


Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MYD88
chr3:38182641(+) A-I intron -    22327324

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MYD88
chr3:38180149-38180150(+) m6A 5'UTR//exon       25456834//24981863
chr3:38180181-38180182(+) m6A CDS//exon       25456834//24981863
chr3:38180311-38180312(+) m6A CDS//exon       25456834//24981863
chr3:38180332-38180333(+) m6A CDS//exon       25456834//24981863//26404942
chr3:38180354-38180355(+) m6A CDS//exon       25456834//24981863//26404942
chr3:38180386-38180387(+) m6A CDS//exon       24981863//26404942
chr3:38180396-38180397(+) m6A CDS//exon       26404942
chr3:38180508-38180509(+) m6A CDS//exon       -
chr3:38180651-38180652(+) m6A exon//intron       -
chr3:38182744-38182745(+) m6A 3'UTR//CDS//exon       24209618//25456834//24981863//22575960
chr3:38182779-38182780(+) m6A 3'UTR//exon       24209618//25456834//24981863//22575960
chr3:38182911-38182912(+) m6A 3'UTR//exon       24209618//25456834//24981863//22575960
chr3:38182930-38182931(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//22575960
chr3:38182956-38182957(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//22575960
chr3:38183003-38183004(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:38183013-38183014(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:38183018-38183019(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:38183028-38183029(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:38183038-38183039(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:38183118-38183119(+) m6A 3'UTR//exon       24209618//25456834//24981863//22608085
chr3:38183186-38183187(+) m6A 3'UTR//exon       24209618//25456834//24981863//22608085
chr3:38183222-38183223(+) m6A 3'UTR//exon       24209618//25456834//24981863
chr3:38183377-38183378(+) m6A 3'UTR//exon       24209618//24981863
chr3:38183479-38183480(+) m6A 3'UTR//exon       25456834//24981863
chr3:38183718-38183719(+) m6A 3'UTR//exon       27773535
chr3:38183776-38183777(+) m6A 3'UTR//exon       24981863//27773535
chr3:38183788-38183789(+) m6A 3'UTR//exon       24981863//27773535
chr3:38183808-38183809(+) m6A 3'UTR//exon       24981863//27773535
chr3:38183871-38183872(+) m6A 3'UTR//exon       24981863//27773535
chr3:38183922-38183923(+) m6A 3'UTR//exon       24981863
chr3:38183975-38183976(+) m6A 3'UTR//exon       24981863
chr3:38183980-38183981(+) m6A 3'UTR//exon       24981863
chr3:38183992-38183993(+) m6A 3'UTR//exon       24981863
chr3:38184053-38184054(+) m6A 3'UTR//exon       24981863//26404942
chr3:38184069-38184070(+) m6A 3'UTR//exon       24981863//26404942
chr3:38184076-38184077(+) m6A 3'UTR//exon       24981863//26404942

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MYD88
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-467-3p
Interactor2: MYD88

Evidence Support:


Weak-Evidence MiRNA microarray//RNA-Seq
Prediction-Evidence microRNA.org//PITA//Targetscan
Support Database ViRBase

References:


PMID 30605755 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line A549 cells Interactor2 expression Upregulation
Description A. Relationships between miRNAs and inversely correlated mRNAs involved in the influenza A pathway.

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