Basic Information:

  VIRBase ID:  

HHID00092600

  Virus:  

Influenza A virus (A/swine/Guangxi/3861/2011(H1N1))

  Host:  

Homo sapiens

  Confidence Score:  

0.6743

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-6090:  MIMAT0023715          MYD88:  NR_164663     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-6090	MYD88
miRBase Accession/Entrez ID	MIMAT0023715	4615
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	IMD68//MYD88D

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-6090	rs1029167197 chr11:128522430    G/A rs1029167197 chr11:128522430    G/T rs1376145295 chr11:128522443    C/T rs1428471711 chr11:128522439    G/GGGGCGGGGCGTCGGGGCA rs1455698166 chr11:128522440    G/A rs909804504 chr11:128522442    G/C rs953585374 chr11:128522441    G/A rs953585374 chr11:128522441    G/T rs1029770131 chr11:128522432    G/A rs953749898 chr11:128522433    G/T rs985507334 chr11:128522435    G/A

RNA Editing:

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	MYD88	chr3:38182641(+) A-I intron -    22327324

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MYD88	chr3:38180149-38180150(+) m6A 5'UTR//exon       25456834//24981863 chr3:38180181-38180182(+) m6A CDS//exon       25456834//24981863 chr3:38180311-38180312(+) m6A CDS//exon       25456834//24981863 chr3:38180332-38180333(+) m6A CDS//exon       25456834//24981863//26404942 chr3:38180354-38180355(+) m6A CDS//exon       25456834//24981863//26404942 chr3:38180386-38180387(+) m6A CDS//exon       24981863//26404942 chr3:38180396-38180397(+) m6A CDS//exon       26404942 chr3:38180508-38180509(+) m6A CDS//exon       - chr3:38180651-38180652(+) m6A exon//intron       - chr3:38182744-38182745(+) m6A 3'UTR//CDS//exon       24209618//25456834//24981863//22575960 chr3:38182779-38182780(+) m6A 3'UTR//exon       24209618//25456834//24981863//22575960 chr3:38182911-38182912(+) m6A 3'UTR//exon       24209618//25456834//24981863//22575960 chr3:38182930-38182931(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//22575960 chr3:38182956-38182957(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//22575960 chr3:38183003-38183004(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:38183013-38183014(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:38183018-38183019(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:38183028-38183029(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:38183038-38183039(+) m6A 3'UTR//exon       24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:38183118-38183119(+) m6A 3'UTR//exon       24209618//25456834//24981863//22608085 chr3:38183186-38183187(+) m6A 3'UTR//exon       24209618//25456834//24981863//22608085 chr3:38183222-38183223(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr3:38183377-38183378(+) m6A 3'UTR//exon       24209618//24981863 chr3:38183479-38183480(+) m6A 3'UTR//exon       25456834//24981863 chr3:38183718-38183719(+) m6A 3'UTR//exon       27773535 chr3:38183776-38183777(+) m6A 3'UTR//exon       24981863//27773535 chr3:38183788-38183789(+) m6A 3'UTR//exon       24981863//27773535 chr3:38183808-38183809(+) m6A 3'UTR//exon       24981863//27773535 chr3:38183871-38183872(+) m6A 3'UTR//exon       24981863//27773535 chr3:38183922-38183923(+) m6A 3'UTR//exon       24981863 chr3:38183975-38183976(+) m6A 3'UTR//exon       24981863 chr3:38183980-38183981(+) m6A 3'UTR//exon       24981863 chr3:38183992-38183993(+) m6A 3'UTR//exon       24981863 chr3:38184053-38184054(+) m6A 3'UTR//exon       24981863//26404942 chr3:38184069-38184070(+) m6A 3'UTR//exon       24981863//26404942 chr3:38184076-38184077(+) m6A 3'UTR//exon       24981863//26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-6090	Exosome Pooled sera     27278097 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Urine     -
	MYD88	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-6090
Interactor2: MYD88

Evidence Support:

Weak-Evidence	MiRNA microarray//RNA-Seq
Prediction-Evidence	microRNA.org//PITA//Targetscan
Support Database	ViRBase

References:

PMID	30605755	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	A549 cells	Interactor2 expression	Upregulation
Description	A. Relationships between miRNAs and inversely correlated mRNAs involved in the influenza A pathway.