Detail Information

Basic Information:


  VIRBase ID:  

HHID00092595

  Virus:  

Influenza A virus (A/swine/Guangxi/3861/2011(H1N1))

  Host:  

Homo sapiens

  Confidence Score:  

0.6743

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-937-5p:           TNFSF10:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-937-5p TNFSF10
miRBase
Accession/Entrez ID		 MIMAT0022938 8743
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - Apo-2L//APO2L//CD253//TL2//TNLG6A//TRAIL

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-937-5p
rs1206103807 chr8:143813013    G/A
rs1213977544 chr8:143813019    C/T
rs1318905167 chr8:143813020    C/G
rs1462097886 chr8:143813013    GCCCCA/G
rs372364994 chr8:143813012    A/G
rs761985672 chr8:143813016    C/A
rs761985672 chr8:143813016    C/G
rs766167551 chr8:143813018    A/G
rs769052591 chr8:143813010    C/A
rs769052591 chr8:143813010    C/T
rs1194683616 chr8:143813023    G/A
rs759210043 chr8:143813027    C/T
rs776649723 chr8:143813022    T/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TNFSF10
chr3:172240024(-) A-I      intronic
chr3:172240061(-) A-I      intronic
chr3:172240068(-) A-I      intronic
chr3:172240059(-) A-I      intronic
chr3:172240103(-) A-I      intronic
chr3:172240099(-) A-I      intronic
chr3:172240072(-) A-I      intronic
chr3:172237037(-) A-I      intronic
chr3:172227706(-) A-I      intronic
chr3:172226046(-) A-I      intronic
chr3:172225973(-) A-I      intronic
chr3:172231721(-) A-I      intronic
chr3:172225960(-) A-I      intronic
chr3:172223757(-) A-I      3'UTR
chr3:172223716(-) A-I      3'UTR
chr3:172223655(-) A-I      3'UTR
chr3:172223794(-) A-I      3'UTR
chr3:172226022(-) A-I      intronic
chr3:172225888(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TNFSF10
chr3:172240165(-) A-I intron -    22327324
chr3:172223716(-) A-G exon 3'UTR    22484847
chr3:172223757(-) A-G exon 3'UTR    22484847
chr3:172223804(-) A-G exon 3'UTR    22484847
chr3:172228534(-) G-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TNFSF10
chr3:172223373-172223374(-) m6A 3'UTR       27773535
chr3:172223515-172223516(-) m6A 3'UTR       27773535
chr3:172223544-172223545(-) m6A 3'UTR       27773535
chr3:172223612-172223613(-) m6A 3'UTR       27773535
chr3:172223709-172223710(-) m6A 3'UTR       27773535//27371828
chr3:172223732-172223733(-) m6A 3'UTR       27773535//27371828
chr3:172223769-172223770(-) m6A 3'UTR       27773535//27371828
chr3:172223865-172223866(-) m6A 3'UTR       24981863//27773535//27371828
chr3:172223939-172223940(-) m6A 3'UTR       24981863//27773535
chr3:172223992-172223993(-) m6A 3'UTR       24981863//27773535
chr3:172224007-172224008(-) m6A 3'UTR       24981863//27773535
chr3:172224046-172224047(-) m6A 3'UTR       24981863//27773535
chr3:172224159-172224160(-) m6A 3'UTR       24981863//28052920//27773535//27371828
chr3:172224167-172224168(-) m6A 3'UTR       24981863//28052920//27773535//27371828
chr3:172224174-172224175(-) m6A 3'UTR       24981863//28052920//27773535//27371828
chr3:172224181-172224182(-) m6A 3'UTR       24981863//28052920//27773535//27371828
chr3:172224189-172224190(-) m6A 3'UTR       24981863//28052920//27773535//27371828
chr3:172224321-172224322(-) m6A 3'UTR//CDS       24981863//27773535//27371828
chr3:172224327-172224328(-) m6A 3'UTR//CDS       24981863//27773535//27371828
chr3:172224413-172224414(-) m6A 3'UTR//CDS       24981863//27773535
chr3:172224515-172224516(-) m6A 3'UTR//CDS       24981863//27773535
chr3:172224531-172224532(-) m6A 3'UTR//CDS       24981863//27773535
chr3:172224565-172224566(-) m6A 3'UTR//CDS       24981863//27773535
chr3:172224608-172224609(-) m6A 3'UTR//CDS       24981863//27773535
chr3:172224672-172224673(-) m6A 3'UTR//CDS       24981863//27773535
chr3:172241135-172241136(-) m6A CDS//exon       27773535//27371828
chr3:172241147-172241148(-) m6A CDS//exon       27773535//27371828
chr3:172241187-172241188(-) m6A 5'UTR//exon       27773535//27371828
chr3:172241281-172241282(-) m6A 5'UTR       24981863//27773535//27371828
chr3:172241291-172241292(-) m6A 5'UTR       24981863//27773535//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-937-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
TNFSF10
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-937-5p
Interactor2: TNFSF10

Evidence Support:


Weak-Evidence MiRNA microarray//RNA-Seq
Prediction-Evidence microRNA.org//PITA//Targetscan
Support Database ViRBase

References:


PMID 30605755 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line A549 cells Interactor2 expression Upregulation
Description A. Relationships between miRNAs and inversely correlated mRNAs involved in the influenza A pathway.

Starting a new search, please wait ...