Detail Information

Basic Information:


  VIRBase ID:  

HHID00092451

  Virus:  

Influenza A virus (A/swine/Guangxi/3861/2011(H1N1))

  Host:  

Homo sapiens

  Confidence Score:  

0.6743

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-467-3p PIK3CG
miRBase
Accession/Entrez ID		 hsa-miR-467-3p 5294
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - p110gamma//p120-PI3K//PI3CG//PI3K//PI3Kgamma//PIK3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PIK3CG
chr7:106521177(+) A-I      intronic
chr7:106521175(+) A-I      intronic
chr7:106522298(+) A-I      intronic
chr7:106522108(+) A-I      intronic
chr7:106522037(+) A-I      intronic
chr7:106521227(+) A-I      intronic
chr7:106517396(+) A-I      intronic
chr7:106517442(+) A-I      intronic
chr7:106517457(+) A-I      intronic
chr7:106521250(+) A-I      intronic
chr7:106522106(+) A-I      intronic
chr7:106521257(+) A-I      intronic
chr7:106522215(+) A-I      intronic
chr7:106521160(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PIK3CG
chr7:106516354(+) G-T intron -    22484847
chr7:106521250(+) A-G intron -    22484847
chr7:106521257(+) A-G intron -    22484847
chr7:106521326(+) A-G intron -    22484847
chr7:106522106(+) A-G intron -    22484847
chr7:106522215(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PIK3CG
chr7:106508246-106508247(+) m6A CDS//intron       -
chr7:106508262-106508263(+) m6A CDS//intron       -
chr7:106508281-106508282(+) m6A CDS//intron       -
chr7:106508357-106508358(+) m6A CDS//intron       -
chr7:106508364-106508365(+) m6A CDS//intron       -
chr7:106508806-106508807(+) m6A CDS//intron       -
chr7:106508871-106508872(+) m6A CDS//intron       25456834
chr7:106508928-106508929(+) m6A CDS//intron       25456834
chr7:106508940-106508941(+) m6A CDS//intron       25456834
chr7:106509039-106509040(+) m6A CDS//intron       -
chr7:106509072-106509073(+) m6A CDS//intron       -
chr7:106509132-106509133(+) m6A CDS//intron       -
chr7:106509162-106509163(+) m6A CDS//intron       -
chr7:106509483-106509484(+) m6A CDS//intron       -
chr7:106509508-106509509(+) m6A CDS//intron       -
chr7:106509531-106509532(+) m6A CDS//intron       -
chr7:106509540-106509541(+) m6A CDS//intron       -
chr7:106509567-106509568(+) m6A CDS//intron       -
chr7:106509627-106509628(+) m6A CDS//intron       -
chr7:106509717-106509718(+) m6A CDS//intron       -
chr7:106509802-106509803(+) m6A CDS//intron       -
chr7:106509824-106509825(+) m6A CDS//intron       -
chr7:106509900-106509901(+) m6A CDS//intron       -
chr7:106509946-106509947(+) m6A CDS//intron       -
chr7:106545807-106545808(+) m6A CDS       -
chr7:106545819-106545820(+) m6A CDS       -
chr7:106545853-106545854(+) m6A 3'UTR       -
chr7:106545897-106545898(+) m6A 3'UTR       -
chr7:106545919-106545920(+) m6A 3'UTR       -
chr7:106545967-106545968(+) m6A 3'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PIK3CG
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-467-3p
Interactor2: PIK3CG

Evidence Support:


Weak-Evidence MiRNA microarray//RNA-Seq
Prediction-Evidence microRNA.org//PITA//Targetscan
Support Database ViRBase

References:


PMID 30605755 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line A549 cells Interactor2 expression Upregulation
Description A. Relationships between miRNAs and inversely correlated mRNAs involved in the influenza A pathway.

Starting a new search, please wait ...